| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0100 |
|---|
| Symbol | tdh |
|---|
| ID | 5612913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 112132 |
|---|
| End bp | 113157 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640930926 |
|---|
| Product | L-threonine 3-dehydrogenase |
|---|
| Protein accession | YP_001471841 |
|---|
| Protein GI | 157373241 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.173553 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAC TGAGTAAGTT AAAGCCAGAA GAGGGTATCT GGATGGTCGA TGCTCCCAAG
CCGGAGATGG GCCATAACGA CCTGTTAATA AAGATCAGAA AAACGGCTAT CTGTGGTACC
GATATCCATA TCTATAACTG GGATGAGTGG TCACAAAAAA CCATTCCGGT ACCTATGGTG
GTTGGGCATG AATATGTTGG TGAAGTCATC GATATGGGCA TTGAAGTACG TGGTTTCGAT
GTCGGAGACC GCGTTTCCGG TGAAGGTCAT ATTACCTGTG GTCATTGCCG TAACTGTCGA
GGCGGACGAA CTCATCTTTG TCGCAATACT TCCGGAGTCG GCGTCAACCG TGATGGGGCT
TTTGCAGAAT ATTTAGTTAT TCCGGCATTC AATGCCTTTA AAATTCCTGA TGATATCTCA
GATGATCTCG CCTCTATCTT CGATCCATTT GGTAATGCAG TGCATACGGC ACTCTCTTTC
GATTTGGTCG GGGAGGATGT GTTAATCACA GGTGCAGGTC CTATCGGGAT CATGGCTGCC
GCCGTTTGTC GTCATGTTGG CGCTCGCCAC GTGGTGATCA CGGACGTCAA TGAATACCGC
CTCGAATTAG CCAATAAGAT GGGGGCGACA CGTGCAGTCA ATGTTGCTAA GGAAAGTCTC
GAAGGGGTTA TGGAAGAACT TGGCATGACC GAAGGTTTCG ATGTGGGCCT CGAGATGTCG
GGAGTACCGA GTGCATTCCA CTCCATGCTG GATACCATGA ACCACGGTGG CAAAATTGCC
ATGCTGGGTA TTCCTGGTGG AGAGATGGCG ATCGACTGGA GTAAAGTTAT CTTTAAAGGA
TTAATCCTGA AGGGTATCTA CGGTCGTGAG ATGTTTGAAA CTTGGTATAA GATGGCGAGC
CTGATCCAAT CCGGATTAGA TATCTCTCCA ATTATCACTC ACCATTTCAA GATTGATGAC
TTCCAGCAAG GCTTCGACGC TATGCGTTCG GGTCAATCAG GTAAGGTTAT TCTTAACTGG
GATTAA
|
|---|
| Protein sequence | MKALSKLKPE EGIWMVDAPK PEMGHNDLLI KIRKTAICGT DIHIYNWDEW SQKTIPVPMV
VGHEYVGEVI DMGIEVRGFD VGDRVSGEGH ITCGHCRNCR GGRTHLCRNT SGVGVNRDGA
FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCRHVGARH VVITDVNEYR LELANKMGAT RAVNVAKESL EGVMEELGMT EGFDVGLEMS
GVPSAFHSML DTMNHGGKIA MLGIPGGEMA IDWSKVIFKG LILKGIYGRE MFETWYKMAS
LIQSGLDISP IITHHFKIDD FQQGFDAMRS GQSGKVILNW D
|
|---|
| |