| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0090 |
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| Symbol | |
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| ID | 5613306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 100160 |
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| End bp | 101500 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640930916 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_001471831 |
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| Protein GI | 157373231 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00142789 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCGAAA AATACAATTA CAGCGGTCCC CGTTATACCT CTTATCCTAC TGCGCTGGAA
TTTGATGACT CTTTTACCGA AGAGAAATTG CTGACTTCAA TTGAAAACAG TAAGAGTGAC
AAGCTTTCAC TTTACGTCCA CATCCCTTTC TGTGCCAAAC TCTGTTATTA CTGCGGCTGT
AATAAGGTGA TCACTCGCCA TCAGCACAAA GCAGATCAGT ACATTGAGTA CCTTGCAGCT
GAGATAGTAA AACGCGCACC ACTATTCAAA AATTATTTAG TCACTCAAAT ACATTGGGGT
GGCGGTACAC CGACCTTCTT GAGTCCCGAC CAAATCTTAA AACTATCGGC CTTAATCAAG
TCCAGCTTCA ATGTGGCTGA TGAGGGTGAG TACTCGATCG AAGTTGACCC ACGTGAAATT
GAGCTATCTA TGTTAGATAC GCTTAAAGAA GCGGGCTTCA ACCGTATCTC TATCGGTGTG
CAAGATTTCA ATAAGAAAGT CCAGATCGCG GTAAATCGCG AACAAGATGA GCAGTTCATC
TTTGACCTGA TGGCTAAGGC AAAAGAACTC GGTTTTGTCT CTACCAACAT CGACCTTATC
TACGGCTTGC CACATCAGAC GCCTGAAACG TTTGCAGAGA CGATGCAACG CGTTCTGGAC
CTGAACCCGG ATCGCCTGTC TGTTTTCAAC TATGCTCACC TGCCTGCACG CTTTGCAGCG
CAGCGTAAGA TTAAAGATGA AGACTTAGCC AGCCCTCAGC AGAAGCTGGA TATGTTGCAT
CAAACCATCG AGACATTGAC CGGCGCAGGG TATCAATATA TCGGTATGGA TCATTTTGCT
AAGCCAGATG ATGAGTTATC GATTCTTCAA AATGAAGGTC GTCTACACAG AAACTTCCAG
GGCTACACTA CCCAGGAAGA GTGTGATCTA TTAGGTCTGG GTGTATCCTC AATCAGCCAA
ATTGGTGATT GTTACGCACA AAACCAAAAA GATATCCGCC CTTACTATGA ATCTGTAGAC
AAGTCGGGTC ATGCACTTTG GAAAGGCTGT AGCTTAAACC GCGACGATGA GATCCGCCGT
GTGGTGATTA AGCAGTTGAT CTGTCATTTC GAGCTGGATA TGGCACAGAT CGATGAGAAG
CTCGGAATCA ACTTCGAAGA GTACTTCGTA GAAGATCTGA AACTGCTGCA AACATTTATC
GATGATAAGC TCGTCGATAT TACAGATAGA AAGATCACCA TCAGCCCAAC GGGTCGCTTG
CTAATCCGTA ATATCTGTAT CTGTTTCGAT GTTTACTATC GTGAGAAAGC GCGTCAACAG
CAGTTCTCAA GAGTGATCTG A
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| Protein sequence | MIEKYNYSGP RYTSYPTALE FDDSFTEEKL LTSIENSKSD KLSLYVHIPF CAKLCYYCGC
NKVITRHQHK ADQYIEYLAA EIVKRAPLFK NYLVTQIHWG GGTPTFLSPD QILKLSALIK
SSFNVADEGE YSIEVDPREI ELSMLDTLKE AGFNRISIGV QDFNKKVQIA VNREQDEQFI
FDLMAKAKEL GFVSTNIDLI YGLPHQTPET FAETMQRVLD LNPDRLSVFN YAHLPARFAA
QRKIKDEDLA SPQQKLDMLH QTIETLTGAG YQYIGMDHFA KPDDELSILQ NEGRLHRNFQ
GYTTQEECDL LGLGVSSISQ IGDCYAQNQK DIRPYYESVD KSGHALWKGC SLNRDDEIRR
VVIKQLICHF ELDMAQIDEK LGINFEEYFV EDLKLLQTFI DDKLVDITDR KITISPTGRL
LIRNICICFD VYYREKARQQ QFSRVI
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