| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0089 |
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| Symbol | |
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| ID | 5613406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 98169 |
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| End bp | 99968 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640930915 |
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| Product | hypothetical protein |
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| Protein accession | YP_001471830 |
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| Protein GI | 157373230 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00456954 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTACAAAA TTTTGGTACC CAGCCTACTT GCCTTCAGCT TAAGTGCCTG CCAGCTAAAC
CTAGTCAATA CCGACCAGCC ACAGGCTCCG GATATTCCGG TCGAGACACA AGCCAGCACG
CAGTTGCAAG GCTTGATAGA AAAGTCATGG CTAATCACAT TAGATGCCAG TCCGGATTTC
GCCTACTCTC AAGGCAACTT AGATAAGGCG GGACAACTGA CCGACCTGTC CCCTCTGGCT
CTGGCTAACC TCAACAAGAG GCGACAGGTG ATACTCTACT CACTAATGGC ACTGGATAGA
GGTCCGCTGA CAAAAGAGGA AAAAATTAAC GCGCAGATAT TGCAAGATCA GCTGCAAAAC
AACGTCGACC TCTATCGTTA TAAAGATCAC TACCTCCCTA TCTCTTCTGA GAGTGGTTTT
CATGCCTATA TCGCCTCGAT AGCTAAGGCT CGTTTTGCAA CTGAGCGGGA CTATGGGAAC
TACATCGCCA AACTAAAAGC ATTGCCAACC TACTTCGCTC AGCAGACTCA TTGGTTACAA
CAGGGATTAG ATAGTGGGAT CACACCGCCT AAAATAACGC TCAAGGGGTT TGAAGAGAGC
ATCAGCGCTT TTATCGTACC GGTCGAACAG AGTGGTTACT TTAAACCTTT CACTCAGTAC
CCAAAGCATT TCACTGACTC ACAGAAGACG GCATTGACCC AGGAGGGTCA TGATCTGGTT
CAGAATACCG TTCTCCCCCT GTATCGACAG TTCTATGATT TTATGACCCT GAGCTATATT
CCCGGGGCCC GTACCAGTAT CGCAACTGCC AGCCTTCCCG ACGGTGAAGC CTTCTATGAA
AACCGGGTCA GGTACTACAC CACCCTGAAT ATGAACTCAG ATCAGGTCCA CCAGCTGGGA
TTAAAAGAGG TCAAACGTAT CCGGGCTGAG ATGGAAACGA TTATCAACGA AGTAGGCTTT
AAGGGTTCTT TTGCAGATTT CCTCCATTTC CTCAGAACCG ATCCTCAATT CTACCCGACG
ACTGCCGAGG AGCTCTTAAA AGAGGCCGCT TATATTGCTA AGAAGGCCGA TGCCATGCTG
CCAAAGTATT TTGGCAAGCT CCCCCGCACT CCCTATGGCA TTCAGGAAGT TCCGGCCGAG
ATCGCACCAA AATACACCAC GGGACGCTAC TCCGGCTCCA ACAGAGACGA TGAACCCGGC
TATTACTGGG TCAACACCTA TGCGCTGGAT AAGCGACCGC TGTACGAGAT GGAGGCCCTC
ACCCTTCATG AAGCTGTGCC GGGACACCAC CTGCAGATAT CCCTCAATAC AGAACTCACT
TCGCTACCTA ACTTTCGCCG CTATAGCTAT ATATCGGCAT TTGGCGAAGG GTGGGGGCTC
TACTCCGAGT ATCTTGGTTT AGAAGCGGGT TTCTACCAAG ATCCCTACAG TAATTTTGGT
CGTCTAACCT ATGAGATGTG GCGAGCGGCC AGATTAGTTG TCGATACAGG CATGCACGCC
AAGGGGTGGA GTCGCCAACA GGCCCTGGAC TTCATGGCCA GTAACACCGC CCTCTCTATG
CATAATGTCA CCACGGAGAT AGACAGGTAT ATCTCCTGGC CGGGACAGGC GCTGTCATAC
AAGATTGGAG AGCTCACCAT AAAACGCTTG CGAGCCAAAG CGGAGGATGC ACTGGGAGAA
GAGTTTGATA TCAGGGCCTT CCACGATGCG GTCCTGGAAA ATGGCTCGGT GCCGATGCAG
GTGCTGGAGC AGCAGATAGA TGACTTTATC TCGGCCCAGA AAGCGATAAA GGGCAGCTAA
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| Protein sequence | MYKILVPSLL AFSLSACQLN LVNTDQPQAP DIPVETQAST QLQGLIEKSW LITLDASPDF
AYSQGNLDKA GQLTDLSPLA LANLNKRRQV ILYSLMALDR GPLTKEEKIN AQILQDQLQN
NVDLYRYKDH YLPISSESGF HAYIASIAKA RFATERDYGN YIAKLKALPT YFAQQTHWLQ
QGLDSGITPP KITLKGFEES ISAFIVPVEQ SGYFKPFTQY PKHFTDSQKT ALTQEGHDLV
QNTVLPLYRQ FYDFMTLSYI PGARTSIATA SLPDGEAFYE NRVRYYTTLN MNSDQVHQLG
LKEVKRIRAE METIINEVGF KGSFADFLHF LRTDPQFYPT TAEELLKEAA YIAKKADAML
PKYFGKLPRT PYGIQEVPAE IAPKYTTGRY SGSNRDDEPG YYWVNTYALD KRPLYEMEAL
TLHEAVPGHH LQISLNTELT SLPNFRRYSY ISAFGEGWGL YSEYLGLEAG FYQDPYSNFG
RLTYEMWRAA RLVVDTGMHA KGWSRQQALD FMASNTALSM HNVTTEIDRY ISWPGQALSY
KIGELTIKRL RAKAEDALGE EFDIRAFHDA VLENGSVPMQ VLEQQIDDFI SAQKAIKGS
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