| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0085 |
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| Symbol | |
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| ID | 5613252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 92706 |
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| End bp | 93479 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640930911 |
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| Product | flagellar biosynthetic protein FliR |
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| Protein accession | YP_001471826 |
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| Protein GI | 157373226 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.402163 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGTCTC TGACCTCGGC TCAACTCAGC TCATTTATCG GTATTTTCTG GTGGCCATTT
TTTCGTATTA TGGGCGCGTT TATGGTGATG CCATTTTTGA GCAGCAGTTA TATTCCCGTT
ACGGTAAGGG TATTGCTGGC ACTCACGATT TCAACCTTGC TCGCTCCCAT GTTACCGCCT
CTACCCAGCG TCGATGCCAT CTCTATCGGG GCACTGTTTC TGGCGATCGA GCAGTTGCTG
GTCGGGTTTA TGTTGGGGCT ATTTCTGACC ATAATGATCC ATGTGATGAC GCTGCTAGGT
GCCATGATGT CCATGCAGAT GGGACTGGCT ATGGCTGTGA TGAATGACCC GGCTAACGGC
AGCTCCAATC CTATTTTGGG GCAGTGGTTT CTGCTGTATG GCACGTTACT CTTTCTTGCT
CTGGATGGGC ACCTGGTCGC GATAGGTGTA CTCGTCGATA GTTTTCGTCT CTGGCCCATT
GGTTCCGGGG TATTAGATCT TCCTCTCATG GGACTCGTTA GCCGCTTTGC CTGGATCTTT
GCATCGGCTC TGATGTTAGC CTTGCCCTCT ATCTTAGCCA TGTTGATGGT GAATATTACC
TTTGGTGTTC TGAGTCGCGC CGCCCCATCT TTGAATGTAT TTGCATTAGG CTTTCCCATG
TCGATGCTGA TGGGATTGCT GTGCGTAATG CTCTCTTTTA GTGGTTTGCC TACCCGTTAC
AGCGATATCT GTCTCGATGC GCTCGAAGCT ATGTATCAAT TTATCGGTGG TTAA
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| Protein sequence | MLSLTSAQLS SFIGIFWWPF FRIMGAFMVM PFLSSSYIPV TVRVLLALTI STLLAPMLPP
LPSVDAISIG ALFLAIEQLL VGFMLGLFLT IMIHVMTLLG AMMSMQMGLA MAVMNDPANG
SSNPILGQWF LLYGTLLFLA LDGHLVAIGV LVDSFRLWPI GSGVLDLPLM GLVSRFAWIF
ASALMLALPS ILAMLMVNIT FGVLSRAAPS LNVFALGFPM SMLMGLLCVM LSFSGLPTRY
SDICLDALEA MYQFIGG
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