Gene Ssed_0082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0082 
Symbol 
ID5613448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp91135 
End bp91491 
Gene Length357 bp 
Protein Length118 aa 
Translation table11 
GC content45% 
IMG OID640930908 
Productflagellar motor switch protein FliN 
Protein accessionYP_001471823 
Protein GI157373223 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1886] Flagellar motor switch/type III secretory pathway protein 
TIGRFAM ID[TIGR02480] flagellar motor switch protein FliN 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAAC ATACTATGTT ACAAGACGAT GATTTTTTAT TGGATGATAA TCTTTTTGGT 
GAAGAGGAGG CTGTTCAAGA GATGAGTAGC CCAAAACCCG TTAAAGATAT CTCATTCTTT
CATCAGTTGC CGGTACAGGT GACGTTAGAA TTGGCGAGTG CCGAGATGTC TCTGGGAGAG
CTGACTCGAA TGGGAGAGGG TGATGTAGTT GCTCTCGATC GCATGGTAGG AGAGCCATTA
GATATACGTG TTAATGGTGC TTTGCTCGGC AGAGGGGAAG TGGTTGAAGT TAATGGCCGA
TATGGAGTGC GTTTATTGGA AGTTGAAGCC ATCAGTCTAA CCGGGGCGAA TGACTGA
 
Protein sequence
MTEHTMLQDD DFLLDDNLFG EEEAVQEMSS PKPVKDISFF HQLPVQVTLE LASAEMSLGE 
LTRMGEGDVV ALDRMVGEPL DIRVNGALLG RGEVVEVNGR YGVRLLEVEA ISLTGAND