Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0082 |
Symbol | |
ID | 5613448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 91135 |
End bp | 91491 |
Gene Length | 357 bp |
Protein Length | 118 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640930908 |
Product | flagellar motor switch protein FliN |
Protein accession | YP_001471823 |
Protein GI | 157373223 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
TIGRFAM ID | [TIGR02480] flagellar motor switch protein FliN |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGAAC ATACTATGTT ACAAGACGAT GATTTTTTAT TGGATGATAA TCTTTTTGGT GAAGAGGAGG CTGTTCAAGA GATGAGTAGC CCAAAACCCG TTAAAGATAT CTCATTCTTT CATCAGTTGC CGGTACAGGT GACGTTAGAA TTGGCGAGTG CCGAGATGTC TCTGGGAGAG CTGACTCGAA TGGGAGAGGG TGATGTAGTT GCTCTCGATC GCATGGTAGG AGAGCCATTA GATATACGTG TTAATGGTGC TTTGCTCGGC AGAGGGGAAG TGGTTGAAGT TAATGGCCGA TATGGAGTGC GTTTATTGGA AGTTGAAGCC ATCAGTCTAA CCGGGGCGAA TGACTGA
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Protein sequence | MTEHTMLQDD DFLLDDNLFG EEEAVQEMSS PKPVKDISFF HQLPVQVTLE LASAEMSLGE LTRMGEGDVV ALDRMVGEPL DIRVNGALLG RGEVVEVNGR YGVRLLEVEA ISLTGAND
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