Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0065 |
Symbol | |
ID | 5610795 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 76302 |
End bp | 77036 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640930891 |
Product | flagellar basal-body rod protein FlgF |
Protein accession | YP_001471806 |
Protein GI | 157373206 |
COG category | [N] Cell motility |
COG ID | [COG4787] Flagellar basal body rod protein |
TIGRFAM ID | [TIGR02490] flagellar basal-body rod protein FlgF [TIGR03506] fagellar hook-basal body proteins |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAAAA TGCTTTATAC CGCAGCAGCG GGGGCGGCTC GGGTGATGGA GGCTCAGGCC ATCAGGGCCA ATAACTTAGC CAATGCCGAA ACCACAGGCT TCAAGGCCGA TCTGGAGCGG GTAAATGCCA CCGTCATCCC CGCCATGGGG AACACTTTAC AGACTCGCGT GATGGCGCAG ACCCAGAGCA GTGGTTTCAG CCACCAAAGT GGTGCCCTGA ATCCTACGGG GAGAACGCTG GATCTGGCTA TTCGTGAGCA GGGTCTGTTC AGCGTAATGA CCGAGCAAGG CGAAGCCTAC ACCCGCTCGG GCACTCTGGT CCCCGATACT AATGGACAGT TGACCATAGA CGGGCGTCCC GTGGCCGGTA TAGATGGCCC TATCGTATTG CCGGAGTATC GCGAACTATT CGTGGGTGAC GATGGCCGAA TCAGCGTGCT GGCGGCCGAG GGCGGCATTA CCGAGGAGGT GGGACAGCTC AAACTGGTTA ACCCGGAGCT CGACACCATG GAGAAAGGTT TAGATGGCCT GTTTTACAGC CGTGATGGCC AGCCGCTACA GGCCAATGAA CAGGTAAAAG TCGACAGCGG TTTTCTGGAG TCCAGTAACG TCAAGGCGGT CAGTGAGCTG ATCGCCTCCA TGGATCTCAG TCGTCAGTTT GAGGTGCAGG TAAAACTCAT GAAAAGTGCA GAGAAGTTAG CCGAAGCTGG TAACAGACTG CTTAGAAACG CTTAA
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Protein sequence | MDKMLYTAAA GAARVMEAQA IRANNLANAE TTGFKADLER VNATVIPAMG NTLQTRVMAQ TQSSGFSHQS GALNPTGRTL DLAIREQGLF SVMTEQGEAY TRSGTLVPDT NGQLTIDGRP VAGIDGPIVL PEYRELFVGD DGRISVLAAE GGITEEVGQL KLVNPELDTM EKGLDGLFYS RDGQPLQANE QVKVDSGFLE SSNVKAVSEL IASMDLSRQF EVQVKLMKSA EKLAEAGNRL LRNA
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