| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0056 |
|---|
| Symbol | |
|---|
| ID | 5610966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 66518 |
|---|
| End bp | 67894 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640930882 |
|---|
| Product | flagellar hook-associated 2 domain-containing protein |
|---|
| Protein accession | YP_001471797 |
|---|
| Protein GI | 157373197 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1345] Flagellar capping protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCAG GTATGAGTGG ATCCCAGTTT GCAGAACAAC TCATCGGCGC TGAGCGAATG
GGTAAAGATC AGCTGTATCA GAGCAATATG ACTAAGCATC AGACCCAGCT TGATGCCTAT
GAAATACTCG AAAAAAGCCT GAATCAGATG ACCAAAAATC TGGAAAAACT AGATGGCGAT
GCCTTCGACA GCAAGACCTC GACCGTAAGC GACGATAACG CATCGATCAC CGTCGAAAGT
GGTGCCGCAA CGGGTAGCTA TGACCTCTAT GTCAAACAGC TGGCTCAGGC CCATCAGATA
TCCAAGAGTT TCAGTGGTGA AGATGCTGCT CTCCCCACAA GTGGTGTGCT CACTATCCAG
GTTGGGCCGG ATGTAGCAGA CACCTTAACC CTGGATATGG CGGTATATAA CCCAGGCGGT
AACGCCACGG TCTCCGATCT CACCGGGATG ATCAACAGCC ACCCGGATAA TCCGGGAGTA
CAAGCTTCAT TGGTGCGCAC CGGCGGTCAG GTTGAACTCA TGCTCTCCTC TACAGAAACC
GGCGCCGACA GCACTATCGA CGTGAAGATG GATGGTGCTG ACTGGGGCAT GACCGAGCGC
AGAGCGGCAC AGGACGCCGA GCTTACCCTC AACGGTATCG ATATAAAAAG CAGCAGTAAC
TACCTGAATA ACGTCATCGA TGGAGTGTCT ATTGAGCTTA ATAAGGCCCA CGGCGTGGGC
GAAAGCAGCA CCATAAAAAT AGAGTCAGAT ACCGATGCCA GTGAACAGGC GGTTAAAGAT
TTTGTGGACA GTTTCAACGA GCTGATGGAT CAGATAAACC AACTGACACG TTCCATGGGA
AGTTCGGTGC TGGATGACAT CAATGACGAC AATGATAAAG ACAAGGATGA AGACGATGAT
GATGACGACG ATGACAGCCC CTCTTCGGTC ACAGAAGATC AGCTCGGCGC ATTAAAGGGC
GATTCGAGTG TCCGCATGCT GCAAAACAGC ATGAGAAGCG CCATCTTCGA TCCAGCATCA
AACGGGATGC GTCTATCGGA TATCGGCATT GAGATGACTC GAGAGGGTAA ATTAGAGATA
GATGAAGACA AGCTAGCCAA GGCCCTGAAA GATGATCCCG GTGCGATAGA GGCCATGTTC
ACCGGCAGCG ATAATTATGT CGACAGAATG GACGGCATCA TCGATCCCTT CACTAAATCC
AACGGCTATT TAGATCTTAA ACAAGAGAAT CTGGATAAGC AGATCACCCG AGTCGAAGAC
AACATGGCTC GCCACGATTA CCAGATGGAG CAGAGGTATC AAATCTACCT CGCCCAATTT
ACAGCAATGG AGGCCACCAT CAACCAACTT AACTCGGCCA GCGCATTGTT TTACTAA
|
|---|
| Protein sequence | MISGMSGSQF AEQLIGAERM GKDQLYQSNM TKHQTQLDAY EILEKSLNQM TKNLEKLDGD
AFDSKTSTVS DDNASITVES GAATGSYDLY VKQLAQAHQI SKSFSGEDAA LPTSGVLTIQ
VGPDVADTLT LDMAVYNPGG NATVSDLTGM INSHPDNPGV QASLVRTGGQ VELMLSSTET
GADSTIDVKM DGADWGMTER RAAQDAELTL NGIDIKSSSN YLNNVIDGVS IELNKAHGVG
ESSTIKIESD TDASEQAVKD FVDSFNELMD QINQLTRSMG SSVLDDINDD NDKDKDEDDD
DDDDDSPSSV TEDQLGALKG DSSVRMLQNS MRSAIFDPAS NGMRLSDIGI EMTREGKLEI
DEDKLAKALK DDPGAIEAMF TGSDNYVDRM DGIIDPFTKS NGYLDLKQEN LDKQITRVED
NMARHDYQME QRYQIYLAQF TAMEATINQL NSASALFY
|
|---|
| |