Gene Ssed_0055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0055 
Symbol 
ID5610314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp66124 
End bp66504 
Gene Length381 bp 
Protein Length126 aa 
Translation table11 
GC content48% 
IMG OID640930881 
Productflagellar protein FliS 
Protein accessionYP_001471796 
Protein GI157373196 
COG category[N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1516] Flagellin-specific chaperone FliS 
TIGRFAM ID[TIGR00208] flagellar biosynthetic protein FliS 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGAATG AGCATGACCC CTTTAATGCA TATAAACAGA CCAGCCTCGA TGCCAGGGCT 
GCAGCGGCGA ATCCTCACGA GATGGTACGC ATGTTACTCG ATGGTCTTTT AGATGAGATA
GAGCGGGCAA GCGGCTTTAT GCAGAGGCGC AGTTTTGAGG ATAAAGGTAA GAGTATTAAT
AAGTGCCTCA ACATAGTACA CGGGCTCGGA TCTATGCTCG ATTTAGAAAA TGGCGGTGAA
GTTGCCAGCG GGCTAAACCG CCTCTATGAC TACTGCAGCC GTCAACTCGT TACCGCCAGT
GTTGAAAATA ACACTCAAGC TTTAGAACCC ATTACCAAGG TAATTTCGAA TGTCAGAGAA
GGCTGGGCCA ACCTCAATTG A
 
Protein sequence
MLNEHDPFNA YKQTSLDARA AAANPHEMVR MLLDGLLDEI ERASGFMQRR SFEDKGKSIN 
KCLNIVHGLG SMLDLENGGE VASGLNRLYD YCSRQLVTAS VENNTQALEP ITKVISNVRE
GWANLN