| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0051 |
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| Symbol | fliA |
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| ID | 5612894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 63481 |
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| End bp | 64203 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640930877 |
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| Product | flagellar biosynthesis sigma factor |
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| Protein accession | YP_001471792 |
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| Protein GI | 157373192 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.900468 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATTCGG GTCAATTAGC CTACCAGGAA GCAAGCGATG AGCAAGTCCC CAATAGACTC
AGCGAAAATC AAGTGATGAG TCAATACCTG CCTCTTGTGA AGCGTTCTAT CTCTCAGCTT
AGAAGCCATT GTGGAACGGT ACTCGCCATA GAAGATATGG AACAGATAGG AATGATGGCA
CTTCTCGAGT CATCACGCCG TTATCCGGGT GAATATGATA ACGGGTTTAT CTCCTATGCC
GGTCAGCGTA TTCGAGGAGC AATTCTTGAT GAGTTAAGGC GTCAGGATTG GCGTCCCCGT
CCCGTCAGAC AACAAGCCCA TGAGCTGAAT GATACGGTTC GAAAGTTAAC TCGTTTACTT
GGGCGAGAGC CGAGTGATAT CGAAGTGGCT GAGGCCATGG GGCTCAACAG AGAGGAATAT
AGAGAGCGCC TCTATGCCTC ACAATCTGAA TCGATGAAGA GTCTGGATGA CATGTTGAGT
GTCGGTGCTC ACTTTCCCGA TAAAACCAAT GTCATTGAGC AATTTTCCGT CCAAAAGACA
TTAATCAAAG CAATATCCAA ATTAAGTAAA AGAGAACAGC TAATTCTGTC GCTTTATTAT
CAACATGAAC TCAATTTAAA AGAAATTGCA GGAACACTGG GATTAACTGA AACGCGGATT
TGTCAGCTCC ACAAGCAGGC AGTGAAACAC CTTCAAGAGA TCTATCAACA GTGGGAACGT
TAG
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| Protein sequence | MNSGQLAYQE ASDEQVPNRL SENQVMSQYL PLVKRSISQL RSHCGTVLAI EDMEQIGMMA
LLESSRRYPG EYDNGFISYA GQRIRGAILD ELRRQDWRPR PVRQQAHELN DTVRKLTRLL
GREPSDIEVA EAMGLNREEY RERLYASQSE SMKSLDDMLS VGAHFPDKTN VIEQFSVQKT
LIKAISKLSK REQLILSLYY QHELNLKEIA GTLGLTETRI CQLHKQAVKH LQEIYQQWER
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