| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0046 |
|---|
| Symbol | |
|---|
| ID | 5612066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 58078 |
|---|
| End bp | 60588 |
|---|
| Gene Length | 2511 bp |
|---|
| Protein Length | 836 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640930872 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001471787 |
|---|
| Protein GI | 157373187 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTTTTGT TGAAATTGAG TCGACCCTCT TTGGTCTTTG TCGTTCCGAT TTTTGCTCTC
ACGCTATACT GCTGCCTAAC TTGTGTCGAT TTTTTCTATG AGCGAAGCGA AATGCAGCGT
GAAGCGATTG CGAGTGAAGT GACACGTATT GAACAGCACC TGATAAAAAT GCAGCATATT
GTAGAATCAG CGTTAGTTAT CCAAGACTCG GCCAGAATAG AGCAAGAGAT TGCTCTCGCG
GCAACAGATT TCAATATCAT GGTTTATACC ATACTCAACC AAGCCAGTAA TATTCGGTTC
GCAAACCATA TCGTTTGGCG GAACAGCAAG GCGGTGGATG TAATTGATGG GTATGATCCA
GTTACTCATA AGCAAGTTTC CAGTCTCAAT AGACCGTATA TTGCAATAAA CCTTGAGCGC
TTAGCGGTAC AGGCCTATTA CCCTTTAGAT ATAAAATTTC AAGAAAACAG TTCCGATTTG
CATGACCTTA TCTATTTAGA ATATGACATA GCCCCCCTGA TAAATTCGGT GAACAAAGAT
GTCCAGCGTA GTGCTATTCG CTCATCGGCA ATACACCTAC TTGGGCTGAT GATCTTTTTA
GTGCTGCTAC ACTTTTACCT TGTTCGTCCA CTTAAGGCAT TAAGCCTGCA AGCGAGTGCT
GTAACGAACA GAGCTCGTTC TGAAGAGCTT GAAGATTCTA ATAAGCCAAT AGTCTCATTG
TTTAGTGAAG TTGCTGCTAT TCAGAGTCAC CTTTCCGGTT TTTACGAAAA ACTCCAACTT
AGTGAGAAAC AGTTGAATGA TAGTCAACAA AGGTGGCTAT TTGCGGTTGA AGTTTCAAGA
AATGGTATCT GGGATTGGAA TTTAATCACC GATGAGGTGT TTCTCTCCGA TCGCTGGAAA
GAGATGCTGG GGTATCACTC TGATGAGCTA AAAGATGAGC TTAAGACGTG GCAGGCAATG
CTTCATCCTG AAGATAAAGC AGAAGCTTTA AATACCCTGC ACAAGTATTT GAATGGTGAA
GTGGAAGAAT TTGAAAGTGT TCACAGGCTA AAGCATAAGT CAGGTCATTA CATTTGGGTG
CTTGACCGGG GGATGATCGT CGACTGGGAT TCTAAAGGTA GACCTGTTCG AATGATTGGC
ACTCATACGG ATGTATCTGA CGATGTAAGA AACCAGCAGG CCATCATGCA TCAGATAAAT
CATGATCTTC TCACTGACCT GGCTAATCGA CGAGCCTTGT TAGATGAGCT TTATCGTATT
AAAGAGCAGA AGCAATCAGG TTCTGTTGCC TTGTTTGTCA TCGATCTTGA TAATTTTAAG
ATGATCAACG ATGCTCTGGG TCATCATCAT GGTGATCGCT TGTTGATTCA AGTTGCCGCA
AGATTATCGA GTTATTTTTC AAACAATGCG CTGATCGCTA GACTCAGTGC CGATGAGTTT
GTCATTCTTG CTCAAGGACT ATCTGACGAT CAGAGTGTCG CAAAGCGACG TACTATGGCT
CTTGCGAGCC AGATCAGGCA GATGATAGGT CGAAGCTTTC ATATCAATAA TCAAACCCTG
AACATTTCGG CCAGTGTGGG TATCTGTGTT TTAGATAAGT TGTCAGATAT CGATCCTGAA
CAGGTATTGC AACATGCTGA TTTGGCAATG CATCAAGCCA AAGAGCAGGG ACGTGACGCT
CATGTTGTTT ATAGTGCTGA TATGGAGCGG GTGGCGCAAA ATAGTTTACT TATCAAGAGT
GAGCTCAAAA ATGCCATTGA ATTGAACCAG CTTTCACTGG TTTATCAGCC CATTGTCGAT
CGCGAAGGTG AAATTATTTG TGCTGAGGCA TTATTACGCT GGCAGCATCC GGAAAAAGGC
AATATCCCTC CCTCGTCGTT TATTCCGGTT GCTGAAGGAA GTGAACTTAT TCAGGATATT
GGACATTGGG TTTTATCTGA GACGTGCCAA TATATTAAAA GGCTTCAAGG TGAGGACGTT
GAGCTGGGCT CTATTGCCAT AAATGTGAGT GCCAGACAAT TTAATCACGA TGACTTCGTC
GAGAGCTTGT TGGGCGTTAT CCGTCAGCAG GGACTCGGAG CAGGGAGTAT TGAGCTTGAA
CTGACAGAGT ATGCCCTGCT GACAAATCTG GATATCATCC GACAACGCAT GGAGGTATTG
AAAGAAGCTG GCATATCCAT TGCTATCGAT GATTTCGGTA CCGGGTATAG CTCTTTGAGC
TATTTACAGA GTTTACCTCT CTCCAGGCTA AAACTAGACG CCGCCTTTGT GAGTCAAATT
GGTGTCAACG ATGCCTCTAA CTCGATCGTG ATAGCGATTA TCAATATGGC TCATAGCCTG
AACTTGCAGG TGGTCGCCGA GGGAGTCGAG ACTCAACAGC AGTATGAGTT CTTATTGCAG
CATGATTGTG ATACTTTCCA GGGCTATCTG TTTAATAGAC CATTAACGGC CGACAATTTT
ATACGTGCAG TAAAATCCGG AAAGGATTTA TCGCTTCAGT CAGCTGGTTA A
|
|---|
| Protein sequence | MLLLKLSRPS LVFVVPIFAL TLYCCLTCVD FFYERSEMQR EAIASEVTRI EQHLIKMQHI
VESALVIQDS ARIEQEIALA ATDFNIMVYT ILNQASNIRF ANHIVWRNSK AVDVIDGYDP
VTHKQVSSLN RPYIAINLER LAVQAYYPLD IKFQENSSDL HDLIYLEYDI APLINSVNKD
VQRSAIRSSA IHLLGLMIFL VLLHFYLVRP LKALSLQASA VTNRARSEEL EDSNKPIVSL
FSEVAAIQSH LSGFYEKLQL SEKQLNDSQQ RWLFAVEVSR NGIWDWNLIT DEVFLSDRWK
EMLGYHSDEL KDELKTWQAM LHPEDKAEAL NTLHKYLNGE VEEFESVHRL KHKSGHYIWV
LDRGMIVDWD SKGRPVRMIG THTDVSDDVR NQQAIMHQIN HDLLTDLANR RALLDELYRI
KEQKQSGSVA LFVIDLDNFK MINDALGHHH GDRLLIQVAA RLSSYFSNNA LIARLSADEF
VILAQGLSDD QSVAKRRTMA LASQIRQMIG RSFHINNQTL NISASVGICV LDKLSDIDPE
QVLQHADLAM HQAKEQGRDA HVVYSADMER VAQNSLLIKS ELKNAIELNQ LSLVYQPIVD
REGEIICAEA LLRWQHPEKG NIPPSSFIPV AEGSELIQDI GHWVLSETCQ YIKRLQGEDV
ELGSIAINVS ARQFNHDDFV ESLLGVIRQQ GLGAGSIELE LTEYALLTNL DIIRQRMEVL
KEAGISIAID DFGTGYSSLS YLQSLPLSRL KLDAAFVSQI GVNDASNSIV IAIINMAHSL
NLQVVAEGVE TQQQYEFLLQ HDCDTFQGYL FNRPLTADNF IRAVKSGKDL SLQSAG
|
|---|
| |