Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0042 |
Symbol | |
ID | 5612496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 48531 |
End bp | 49451 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640930865 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_001471783 |
Protein GI | 157373183 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0408] Coproporphyrinogen III oxidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0059194 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.559288 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGTGC CAGACACCAG TGCAGTAAAG GCGTTTTTAC TCGATCTTCA ACAGCGAATT TGTGAAGGTT TGGAGCAGTT AGATGGAAAA GGGACGTTTG AAGCTGATTC CTGGAAGCGT GAAGAGGGAG GTGGCGGTAC GAGCCGTGTA TTAACTAATG GCAAAGTATT CGAGCAGGCA GGTGTAAACT TTTCTCATGT TACCGGTGCT GCAATGCCGG CATCGGCAAC GGCTAACAGG TCCGAACTTG AAGGCCGTAG TTTTGAGGCT ATGGGGGTTT CTTTAGTTAT TCACCCAAAA AATCCATTTC TTCCTACCAC TCATGCCAAT GTTCGTTTCT TTATCGCTAA AAAAGAGGGA GCAGATCCTG TTTGGTGGTT TGGCGGTGGT TTCGACCTTA CTCCCTATTA CCCGTTTGAA GAGGATGTAA TCGAATGGCA CCAGAATGCC CATGATTTAT GTCAGCCATT TGGAGAATCT GTTTATCCTA AATATAAGAA GTGGTGTGAT GAATACTTCT TCTTACCCCA TCGTAATGAA ACTCGTGGTG TTGGCGGCTT ATTCTTTGAC GATCTCAATC AAGACGGGTT TGAAAAAAGC TTCGAGTTTA TGCAGGCTGT CGGTAATGGT TTCTTGACTT CATACGCTCC AATTGTTGAG CGCCGTAAAG ATACAGAATA TGGCGAAAAA GAGCGAGAGT TCCAGCTATA TCGTCGTGGA CGTTATGTTG AGTTTAATCT GGTCTACGAC AGAGGAACCT TGTTTGGATT GCAAACTGGT GGCCGAACCG AGTCGATATT GATGTCTATG CCGCCGCTGG TTCGTTGGCA GTACGCCTAT ACACCGGAAG AAAATTCGGC TGAAGCACTT CTTTATACCG ACTTCTTAAA ACCGAAGGAC TGGTTAAACT TAGATGAATA A
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Protein sequence | MSVPDTSAVK AFLLDLQQRI CEGLEQLDGK GTFEADSWKR EEGGGGTSRV LTNGKVFEQA GVNFSHVTGA AMPASATANR SELEGRSFEA MGVSLVIHPK NPFLPTTHAN VRFFIAKKEG ADPVWWFGGG FDLTPYYPFE EDVIEWHQNA HDLCQPFGES VYPKYKKWCD EYFFLPHRNE TRGVGGLFFD DLNQDGFEKS FEFMQAVGNG FLTSYAPIVE RRKDTEYGEK EREFQLYRRG RYVEFNLVYD RGTLFGLQTG GRTESILMSM PPLVRWQYAY TPEENSAEAL LYTDFLKPKD WLNLDE
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