| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0040 |
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| Symbol | |
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| ID | 5613696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 47275 |
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| End bp | 47838 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640930863 |
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| Product | DNA topoisomerase type IA Zn finger domain-containing protein |
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| Protein accession | YP_001471781 |
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| Protein GI | 157373181 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000217946 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.173553 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAAGA TCGATCAACA GCTATTTAGT TCCCATGAGC ATGCACTCGA GAAAGAGTTT
GAGCTTTGTC CAAAATGTGG CTGTGAACTA TCGATAAAAA ATAGTAAACA TGGTGGTTTC
ATCGGCTGTA ATAACTATCC GACCTGTGAT TATACCCGGC CACTGGTACA ACACGAGTCG
ATAGAAACCC AGGTGATTGA GGGATCTCAA TGTCCTGAGT GTGGACACGA GTTAGCTGTA
AAGTCTGGAC GATTTGGCAT TTTCATCGGT TGTACTCAAT ATCCTGAGTG TAAACATATC
GAGAAACAAG ACCAAGAGGT GGGAGGGGAA GAGATACCTT GCCCCATCTG TACTAAAGGC
CATATTGAGC ATAGAACCAA TCGTTTCGGC AAAAGCTTCT ATGCATGTAG TGGCTACCCT
AAGTGTAAGT TTCTGGTTAA TTACCCTCCA GTGCATGAAA CCTGTCCCGA CTGTGGTTTT
GGTATTTTGG TTGAACGTAA GGGAGCGGCT GGGGCACGTT TAGAATGCCC GAAAAAGCAA
TGTAAGTATA AGCGCGCCCT ATAG
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| Protein sequence | MSKIDQQLFS SHEHALEKEF ELCPKCGCEL SIKNSKHGGF IGCNNYPTCD YTRPLVQHES
IETQVIEGSQ CPECGHELAV KSGRFGIFIG CTQYPECKHI EKQDQEVGGE EIPCPICTKG
HIEHRTNRFG KSFYACSGYP KCKFLVNYPP VHETCPDCGF GILVERKGAA GARLECPKKQ
CKYKRAL
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