Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0036 |
Symbol | |
ID | 5613594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 42423 |
End bp | 43526 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640930859 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001471777 |
Protein GI | 157373177 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.971795 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.107314 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAACC CCATGAAACG ACTAATTTTA CTCGCTTTAA TGATAATAAG TTGCTCGTTC GTGTTCGCGG ATACTTTGAC ATTAAAGTCC GGGCACCCAG ATTCTTATGT TGTAAAGAAG GGAGACACCC TCTGGGATAT CTCCGAACAC TTTTTAAATG ATCCCTGGCG TTGGCCTAAA CTCTGGGGCG CAAACCCTCA AATAGCCAAC CCACACCTTA TCTATCCGGG GGATCGACTC ACCTTAGTAT TTATCGATGG TGAACCAAGA TTAGTGGTTA AGCCGCATAT TCGCAAAAGC CCCGAAGGTC GAATAATGCC AAAAGGTGGG GCTATACCTG CGGTTGACTT GTCCCTTATC CGTCCATTTT TGGTGCAAAA CAGAGTTGTA GACGGTGATT GGTTTGATGA GCAGCCTCTG GTTATGGGCG GCGAAAGTGA GTCCAAATAT CATATCGCTA ACGATATCAT CTATGTTCAA GCTGAGCTCA CCTTAGGTGA TAAATTTGGC GTGTATGCTC AAGGCCGTGA GTTTGTCAGC AAGGAAGAGG GCGAGCTACT GGGTCAAGAA GTGATGTTGA CTGCAAGTGG TCGTGTCATC GAATCCGGAC CTATTTCTAA AGTCAGGTTG CTGAGTAATT TTCGTGAAAC GAAAGCCGGA TACCGAGTCT TACCGATTGA AGAAGATTCC CTGCTCTCCG CTTATTTCAT GCCCAGAGCC GCCAACCTGG AAACTCCTGC ATCGGTAATC GCTTCTGATA AGAAGAACAG AGAGATGGGT AAGCTGGATG TTGTCTACAT AGATAAAGGA AATGAGGATG GTGTGGAAGC CGGACACGTG TTCTCTATCT TCAGAGAGGG TGTCGATATC GTTATCAACG GCGATGGCCA GCCGGTGCTG CCTCAGGATC GTAGCACCTA TGAAAGCTTA TTAACCGGGA TATCCTCCGA TAACGCTGTA AAAATGCCGG ATATCTATCG TGGAAAGCTT ATGGTGTTCA AGGTATTCGA TAAAACCAGC TTGGCTTTGA TCATGGTAAA TGAAAGGCCT GTGCGGGTTG ACGACAAGCT TATTCAGCCA AGCTCTCTAT TGGCGAGTGA ATAG
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Protein sequence | MENPMKRLIL LALMIISCSF VFADTLTLKS GHPDSYVVKK GDTLWDISEH FLNDPWRWPK LWGANPQIAN PHLIYPGDRL TLVFIDGEPR LVVKPHIRKS PEGRIMPKGG AIPAVDLSLI RPFLVQNRVV DGDWFDEQPL VMGGESESKY HIANDIIYVQ AELTLGDKFG VYAQGREFVS KEEGELLGQE VMLTASGRVI ESGPISKVRL LSNFRETKAG YRVLPIEEDS LLSAYFMPRA ANLETPASVI ASDKKNREMG KLDVVYIDKG NEDGVEAGHV FSIFREGVDI VINGDGQPVL PQDRSTYESL LTGISSDNAV KMPDIYRGKL MVFKVFDKTS LALIMVNERP VRVDDKLIQP SSLLASE
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