| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0034 |
|---|
| Symbol | |
|---|
| ID | 5613592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 40788 |
|---|
| End bp | 41777 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640930857 |
|---|
| Product | methionyl-tRNA formyltransferase |
|---|
| Protein accession | YP_001471775 |
|---|
| Protein GI | 157373175 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0223] Methionyl-tRNA formyltransferase |
|---|
| TIGRFAM ID | [TIGR00460] methionyl-tRNA formyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0590691 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAACCAT TAAACATTAT TTTTGCTGGT ACTCCAGATT TTGCGGCTCG CCATCTGCAA
GCCCTCATCG ATTCAGAACA CAATATTATC GGTGTTTATT CACAACCGGA TAGGCCGGCT
GGACGAGGAA AGAAACTGCA GGCGAGTCCG GTAAAAAGTC TGGCCATCGA GCATAACCTT
CCCGTCTTTC AGCCAAAGTC ACTTCGTGAT GAACAGGCTC AAGCAGAACT TGCCAACCTG
AATGCCGATA TCATGGTTGT TGTCGCCTAC GGGCTTATCT TGCCAAAAGT CGTGCTCGAC
ACCCCTAAAC TTGGCTGTAT CAATGTGCAC GGCTCAATAT TGCCTCGCTG GCGTGGTGCG
GCGCCAATCC AACGCGCCCT TTGGGCTGGT GACACAGAAA CAGGCGTCAC CATCATGCAG
ATGGATATCG GTCTGGATAC CGGCGATATG TTATTGAAGA CCCGGTTACC GATTGAAGAT
AACGATACTT CGGCGAGCCT CTATGAAAAA CTGGCTTTAC AGGGGCCTGA TGCCCTCATT
GAGGCGCTTA CCGGGTTAGC TAAAGGTGAG TTAACGGCAG AGAAACAGGA TGAAAGCCTG
GCTAATTACG CAGAAAAGCT CAGCAAAGAG GAGGCTGAGC TTGACTGGAG TAAATCGGCG
CTCGAACTGT GGCGTGAGAT CAGAGCCTTT AATCCATGGC CTATAAGCCA CTTTACTCAC
CAGGATGCCA GTATCAAAGT AAGAGAATCT GCGGTCAGCA ACCTCAGCAG TGATGCACCA
GCAGGTACCA TTATATCGGC GGGTAAACAG GGTATAGATA TTGCCACTGG TGACGGCGTG
TTAACTCTGC TTAATATGCA GTTGCCGGGC AAGAAGCCAT TGAGTGTCGG CGACATTTTG
AATTCTCGTG GGGAGTGGTT TACTCCAGGC ACACTCTTAA ATAGTAAAAA GCTGATTGGC
AAAGAGCCAG CGGTAAAAGA GGCTGAGTAA
|
|---|
| Protein sequence | MKPLNIIFAG TPDFAARHLQ ALIDSEHNII GVYSQPDRPA GRGKKLQASP VKSLAIEHNL
PVFQPKSLRD EQAQAELANL NADIMVVVAY GLILPKVVLD TPKLGCINVH GSILPRWRGA
APIQRALWAG DTETGVTIMQ MDIGLDTGDM LLKTRLPIED NDTSASLYEK LALQGPDALI
EALTGLAKGE LTAEKQDESL ANYAEKLSKE EAELDWSKSA LELWREIRAF NPWPISHFTH
QDASIKVRES AVSNLSSDAP AGTIISAGKQ GIDIATGDGV LTLLNMQLPG KKPLSVGDIL
NSRGEWFTPG TLLNSKKLIG KEPAVKEAE
|
|---|
| |