Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0030 |
Symbol | |
ID | 5610102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 35726 |
End bp | 36166 |
Gene Length | 441 bp |
Protein Length | 146 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 640930853 |
Product | hypothetical protein |
Protein accession | YP_001471771 |
Protein GI | 157373171 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.11416 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0504601 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTTTA GCTTCCCTAA TAAGATGAGT ATTTTTACTC GTGTTTTTCA ACTTATTCTG TGCATAACCC TTATCTTTAT TTTGGCTAAA CTATTTTTTG AGGCTGGAGT ATTGGGAGTT AATCCCATAC TGAAGAATAT TGTTTTTATA AGTTCTTGTC TTGCTATCGG CTGGATTTTC AAAATTAAGT ATTATTGGAA TTATCAGCAA GATCATCAAG ATCATCTTTC AGTGATACTT GGCATAAATT TGTTTGGGTT CTCATTCGTA AAAATATTTG ATAATGGAAT TTTAGTTATG AAACATAGAG GTTTTTGGAA AAAGCAACTA AATCTGGATG TTAACTCATC ACTTACCGTT ACGGTTCGTT TAGATCAAAG TCAATCACCA TCTTTTGGGT GTCTCGCTGT TAAGAACTCA AAACAGCTTG TATCTACATA A
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Protein sequence | MNFSFPNKMS IFTRVFQLIL CITLIFILAK LFFEAGVLGV NPILKNIVFI SSCLAIGWIF KIKYYWNYQQ DHQDHLSVIL GINLFGFSFV KIFDNGILVM KHRGFWKKQL NLDVNSSLTV TVRLDQSQSP SFGCLAVKNS KQLVST
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