Gene Ssed_0029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0029 
Symbol 
ID5610101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp34690 
End bp35229 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content48% 
IMG OID640930852 
Productprotoporphyrinogen oxidase 
Protein accessionYP_001471770 
Protein GI157373170 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism 
COG ID[COG4635] Flavodoxin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00401521 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0528505 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCAG TTCTAGTACT TTATTACTCT CGAGGCGGGC ATACCGCTAA GATCAGCCGA 
GCCATTGCTG AACACATTGA AAATGGTGGC AATACATGTG CGGTAATGCA CATCAGTGAG
GCGATGAAAG AGGGGCTGGA CTGGTCCAAG TATGACAGTG TCGCCTTGGG GGCTTGCGTC
ATGTATGGCA CTTACGACAA GAGTGTCTTC GAGTTCACCA CTAAACATCA AGCCGCCTTG
AGCGAGAAGC CGAGCAGTTT TTACAGTGTT AACGTCGTCG CGCGTAAGCC TGAAAAGCGC
GTGCCTGAAA ATAATAAATA CCTGCAGAAG TTTATCGAGT TATCTCCCTG GAAACCGAAA
GATGTCAAAG TGATTGCAGG TAAGGTCGAT TACCCATCTT GGCGTTGGTG GGACAGATTG
GCTATTCAGT TGATTATGAA GATGACGGAT GGCCCAACGG ATCCGAAAAC CGTCATCGAT
TACACCGACT GGGATGATGT TAAGGTCTAC GCTGACCATA TTGTTAGTCT GGCAGACTAA
 
Protein sequence
MKSVLVLYYS RGGHTAKISR AIAEHIENGG NTCAVMHISE AMKEGLDWSK YDSVALGACV 
MYGTYDKSVF EFTTKHQAAL SEKPSSFYSV NVVARKPEKR VPENNKYLQK FIELSPWKPK
DVKVIAGKVD YPSWRWWDRL AIQLIMKMTD GPTDPKTVID YTDWDDVKVY ADHIVSLAD