Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0029 |
Symbol | |
ID | 5610101 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 34690 |
End bp | 35229 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640930852 |
Product | protoporphyrinogen oxidase |
Protein accession | YP_001471770 |
Protein GI | 157373170 |
COG category | [C] Energy production and conversion [H] Coenzyme transport and metabolism |
COG ID | [COG4635] Flavodoxin |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00401521 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0528505 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAATCAG TTCTAGTACT TTATTACTCT CGAGGCGGGC ATACCGCTAA GATCAGCCGA GCCATTGCTG AACACATTGA AAATGGTGGC AATACATGTG CGGTAATGCA CATCAGTGAG GCGATGAAAG AGGGGCTGGA CTGGTCCAAG TATGACAGTG TCGCCTTGGG GGCTTGCGTC ATGTATGGCA CTTACGACAA GAGTGTCTTC GAGTTCACCA CTAAACATCA AGCCGCCTTG AGCGAGAAGC CGAGCAGTTT TTACAGTGTT AACGTCGTCG CGCGTAAGCC TGAAAAGCGC GTGCCTGAAA ATAATAAATA CCTGCAGAAG TTTATCGAGT TATCTCCCTG GAAACCGAAA GATGTCAAAG TGATTGCAGG TAAGGTCGAT TACCCATCTT GGCGTTGGTG GGACAGATTG GCTATTCAGT TGATTATGAA GATGACGGAT GGCCCAACGG ATCCGAAAAC CGTCATCGAT TACACCGACT GGGATGATGT TAAGGTCTAC GCTGACCATA TTGTTAGTCT GGCAGACTAA
|
Protein sequence | MKSVLVLYYS RGGHTAKISR AIAEHIENGG NTCAVMHISE AMKEGLDWSK YDSVALGACV MYGTYDKSVF EFTTKHQAAL SEKPSSFYSV NVVARKPEKR VPENNKYLQK FIELSPWKPK DVKVIAGKVD YPSWRWWDRL AIQLIMKMTD GPTDPKTVID YTDWDDVKVY ADHIVSLAD
|
| |