Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0026 |
Symbol | |
ID | 5612760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 31956 |
End bp | 33413 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640930849 |
Product | TrkH family potassium uptake protein |
Protein accession | YP_001471767 |
Protein GI | 157373167 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0293301 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0416133 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATATA GAACAATAAT AAGAATAACA GGCCTCTTAA TGGGGTTGTT CTCTCTGTCA TTACTTCCTC CGGCTTTGGT GGCAGTGATC TATAAAGATG GTGGCGGAAC GGCATTTATA CAGGCTTTTG CACTCAGCCT TTTTCTTGGC TTTATTCTTT GGTATCCAAA CAGAAAGCAC CACAAAGATC TGCGTACCCG TGAAGGCTTC CTGCTCGTGG TTCTTTTCTG GGGTGTGCTA GGTTCTATCG GTGCCGTGCC CTTTATATTT ACCGCTCAAC CAGACCTGAG TATGACCGAC AGCTTTTTCG AGTCATTCTC GGCGCTGACA ACTACAGGTG CTACTGTGAT TGTTGGTCTG GATTCACTTC CTAAAGCAAT CCTGTTTTAT CGCCACCTGT TGCAATGGTT AGGCGGCATG GGGATCATTG TGCTGGCTGT GGCAATATTA CCTGTATTGG GTATCGGGGG GATGCAGCTC TATCGAGCAG AAATGCCTGG ACCCGTAAAA GACAGTAAGA TGACGCCCAG GATTGCAGAG ACGGCTAAGG CGTTGTGGTA TATCTATTTT GCATTAACGA TTGCCTGTGC ATTTGCTTAT TGGGTCGCAG GCATGGATCT ATTTGATGCT ATCTGCCACT CTTTCTCGAC GATTGCCATT GGCGGTTTCT CCACCCATGA TGCCAGTATG GGCTACTTCG ACAGCACTGC AATTAACATG GTGTGTGTGG TTTTTCTGCT TATCGCGGCG CTTAATTTTA GCCTGCACTT CGCCGCTTTT ACACGTCGTG GAATCAACCT GAAAGTCTAT TTCAGAGATG CTGAGTTTAA GGCTTTAATC ATAGTGCAGC TGGTTTTGAC CGGGATCTGT TTTGCGACTC TCTACCATTC GGGGATCTAT GACTCACCCG AAGAGACATT AGACTTTGCC CTATTTCAGG CTGTTTCAAT ATCTACCACG GCAGGCTTCG GTACTGAAAG CTTCCATGTG TGGCCACTAT TCCTGCCGAT GTTACTTATC TTCTCAAGTT TCATTGGTGG CTGTGGTGGA TCGACCGCCG GTGGTATCAA GGTGATGCGG ATGATCTTGC TGTTGAAGCA GGGCTCACGA GAATTGAAAC GTCTTGTACA TCCAAGAGGA ATGTTCTCCA TCCGTATAGG AAACAAGGCC CTTCCTGAGC GTGTTATCGA TGCGGTATGG GGGTTCTTCT CTGCCTATGC GCTGGTCTTC GTTATCTGTA TGTTGGCTTT GATGGCGATG GGGATGGATA ATATCACCGC ATTTAGTGCT ACCGCGGCTT GCCTGAATAA CCTGGGGCCA GGTCTGGGTG AAGTTGCCAG CAACTATGCC AGTATCAGTG ATGGCGCTAA GTGGGTTCTG CTGATAGCTA TGCTGTTTGG ACGACTCGAA GTCTTTACCT TATTGGTACT GTTTACACCA ACATTCTGGA GAACCTAA
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Protein sequence | MQYRTIIRIT GLLMGLFSLS LLPPALVAVI YKDGGGTAFI QAFALSLFLG FILWYPNRKH HKDLRTREGF LLVVLFWGVL GSIGAVPFIF TAQPDLSMTD SFFESFSALT TTGATVIVGL DSLPKAILFY RHLLQWLGGM GIIVLAVAIL PVLGIGGMQL YRAEMPGPVK DSKMTPRIAE TAKALWYIYF ALTIACAFAY WVAGMDLFDA ICHSFSTIAI GGFSTHDASM GYFDSTAINM VCVVFLLIAA LNFSLHFAAF TRRGINLKVY FRDAEFKALI IVQLVLTGIC FATLYHSGIY DSPEETLDFA LFQAVSISTT AGFGTESFHV WPLFLPMLLI FSSFIGGCGG STAGGIKVMR MILLLKQGSR ELKRLVHPRG MFSIRIGNKA LPERVIDAVW GFFSAYALVF VICMLALMAM GMDNITAFSA TAACLNNLGP GLGEVASNYA SISDGAKWVL LIAMLFGRLE VFTLLVLFTP TFWRT
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