| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0023 |
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| Symbol | fadB |
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| ID | 5612855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 27258 |
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| End bp | 29408 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640930846 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_001471764 |
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| Protein GI | 157373164 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00126113 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCTACC AAAGTCCTAC GATTCAGGTT GAGTTACTTG AGGATAATAT TGCCCGGTTA
TGCTTTAACG CATCGGGCTC TGTCAATAAA CTGGATAGAG AGACGATTAA CTCTCTCGAT
GCAGCATTAG ACGCAATTCA GCAAGACTCA CACATTCAAG CATTAGTACT GACGTCAGCT
AAAGGTGCTT TTATTGTCGG TGCCGATATC ACTGAGTTTC TCGGCTTATT TGCTCAAGAA
GATAGTGTTC TTCTTCCATG GATTGCCGAA GCTAACGTGG TATTCAATAA GTTAGAAGAT
CTCCCATTCC CAACAATTTC AGCCATTAAC GGCTTCGCAT TGGGTGGTGG GTTCGAAACT
GTGCTGGCAA CCGATTTCCG TATTGCCGAT ACCACAGCAA AAATTGGTCT GCCAGAAACT
AAGTTGGGCT TAATTCCTGG TTTCGGTGGT ACCGTTCGTC TACCTCGCCT TATCGGTACC
GATAATGCGC TGGAGTGGAT AACATCGGGT AAAGATCAAC GCCCTGAAGC CGCATTAAAA
GTTGGCGCTA TCGATGCGGT TGTTGCTCCC GAAAATTTAC AAGCTTCAGC CATTAAGATG
CTTAAAGATG CACTGGCTGA AAAGCTCGAC TGGCAATCTC GCCGCGCCCG TAAACAGGCG
GCACTAACGC TACCAAAATT AGAAGCCATG ATGTCATTTG CTACAGCCAA AGGCATGGTA
TTCAAGATAG CAGGCAAACA TTACCCGGCT CCAATGGCGG CAATCAGTGT TATCGAACAA
GCCGCAAGAT GCGGACGTGC TGACGCATTG AAAGTTGAAC ACCAAGCCTT TGTTAAGCTG
GCCAAGACCG ACGTTGCACA GGCATTAATC GGTATATTCC TTAACGACCA ACTCGTTAAA
GGCAAGGCAA AGAAAGCCGG CAAGTTAGCG AAAAATATCG ATACAGCAGC CGTACTCGGT
GCCGGTATCA TGGGTGGTGG TATCGCCTAT CAGAGTGCCA GCAAAGGCAC TCCGATTATT
ATGAAAGATA TCGCACAACC TGCCCTCGAA TTGGGTCTGG GCGAAGCCTC TAAGTTACTG
GCCGCTCAGA TCAAGCGTGG CCGTTCGACG CCTCAGAAAA TGGCTAAGGT CCTCAATAAC
ATCACTGCGA CCCTTGATTA CACACCGGTT AAAGATGTCG ACGTTGTCGT AGAAGCCGTT
GTTGAGCATC CAAAAGTTAA GTCTATGGTA CTGGCAGAGG TTGAACAAAA CGTTAGTGAT
GACGCCATCA TCACCTCAAA CACCTCGACC ATCTCGATCA ACCTGCTCGC TAAGAGCCTG
AAGAAGCCTG AGCGCTTCTG TGGTATGCAC TTCTTTAACC CGGTGCATAA GATGCCACTC
GTTGAGGTCA TTCGTGGTGA GAATAGTTCT GAAGAGACTA TCGCTTCCGT TGTCGCTTAC
GCCAGCAAGA TGGGTAAAAC ACCTATCGTT GTTAACGACT GCCCCGGCTT CTTTGTAAAC
CGCGTGCTCT TTCCTTACTT TGCAGGCTTC AGCGGCCTGC TTGCAGACGG CGCAGATTTC
GCCGCTATCG ATAAGGTGAT GGAGAAGCAA TTTGGCTGGC CTATGGGTCC GGCCTACCTG
CTCGATGTAG TCGGTATTGA TACCGGTCAT CATGCACAAG CCGTTATGGC CGAAGGCTTC
CCGGATCGCA TGGGTAAGAA TGGTAAAGAT GCTATCGATA TCATGTTCGA AGCTGAGCGC
TTCGGACAGA AGAACAGCAA AGGTTTCTAT GCTTATTCGG TCGACCGTCG CGGCAAGCCA
AAGAAAGATG TCGACCCAAC CAGCTATGAG CTATTAGGCG CAGAGTTTGG TGAGCTTAAG
GCATTTGAAT CTGAGGATAT TATCGCCCGC ACCATGATCC CTATGATTAT CGAAACGGTT
CGCTGTCTCG AAGAGGGAAT TATTGCGACT CCGGCGGAAG CCGATATGGG TCTGGTATTT
GGTCTTGGAT TCCCGCCATT CAGAGGTGGT GTGTTCCGCT ATATCGATAC CATGGGTGTA
GCTAACTTCG TGGCACTTGC CGATAAATAT GCTCACCTAG GTGGCCTATA TCAAGTAACC
GATGCCATGC GCGAACTCGC CGCTAATAAC GGCAGCTACT ACCAGTCTTA A
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| Protein sequence | MIYQSPTIQV ELLEDNIARL CFNASGSVNK LDRETINSLD AALDAIQQDS HIQALVLTSA
KGAFIVGADI TEFLGLFAQE DSVLLPWIAE ANVVFNKLED LPFPTISAIN GFALGGGFET
VLATDFRIAD TTAKIGLPET KLGLIPGFGG TVRLPRLIGT DNALEWITSG KDQRPEAALK
VGAIDAVVAP ENLQASAIKM LKDALAEKLD WQSRRARKQA ALTLPKLEAM MSFATAKGMV
FKIAGKHYPA PMAAISVIEQ AARCGRADAL KVEHQAFVKL AKTDVAQALI GIFLNDQLVK
GKAKKAGKLA KNIDTAAVLG AGIMGGGIAY QSASKGTPII MKDIAQPALE LGLGEASKLL
AAQIKRGRST PQKMAKVLNN ITATLDYTPV KDVDVVVEAV VEHPKVKSMV LAEVEQNVSD
DAIITSNTST ISINLLAKSL KKPERFCGMH FFNPVHKMPL VEVIRGENSS EETIASVVAY
ASKMGKTPIV VNDCPGFFVN RVLFPYFAGF SGLLADGADF AAIDKVMEKQ FGWPMGPAYL
LDVVGIDTGH HAQAVMAEGF PDRMGKNGKD AIDIMFEAER FGQKNSKGFY AYSVDRRGKP
KKDVDPTSYE LLGAEFGELK AFESEDIIAR TMIPMIIETV RCLEEGIIAT PAEADMGLVF
GLGFPPFRGG VFRYIDTMGV ANFVALADKY AHLGGLYQVT DAMRELAANN GSYYQS
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