| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0022 |
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| Symbol | fadA |
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| ID | 5612854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 26073 |
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| End bp | 27236 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640930845 |
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| Product | 3-ketoacyl-CoA thiolase |
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| Protein accession | YP_001471763 |
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| Protein GI | 157373163 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
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| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000376188 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACAAG CAGTTATCGT AGATTGCATC CGTACTCCCA TGGGCCGTTC AAAGGCTGGA
GTATTTAGAA ATGTACGCGC AGAGACACTC TCTGCAGAAT TGATGAAAGC ACTGTTAGTG
CGTAACCCTC AGCTGGATCC TAACACCATT GAAGATGTGA TCTGGGGTTG TGTACAGCAG
ACTCTGGAAC AGGGCTTCAA TATCGCACGT AACGCATCTC TCCTTGCCGG TCTACCCAAG
CAGATTGGTG GCGTAACAGT CAACCGTCTG TGTGGTTCAT CTATGGATGC CCTGCATCAG
GCGGCGCGTG CCATCATGAC CGGTCAAGGC GATACGTTCA TCATAGGCGG TGTCGAGCAC
ATGGGGCACG TTCCTATGAA CCACGGTGTG GACTTCCATC CAGGCCTCGC TAATAACGTA
GCAAAAGCTT CGGGTATGAT GGGCCTTACT GCCGAGATGC TAGGCAAGAT GCACGGTATT
ACTCGTGAGC AGCAAGATGA ATTTGCCGTC CGATCACATC AACGTGCTCA TGCAGCAACA
GTTGAAGGAC GTTTCGCAAA CGAAATCCAC CCTATCGAGG GTCACGATGC CGATGGAGCG
CTCATCAAGG TTGAACACGA TGAAGTGATT CGCCCTGAGA CCTCTATGGA ATCTCTATCT
GGTCTGCGTC CGGCGTTCGA CCCAGCCAAC GGTACAGTCA CGGCAGGAAC CTCATCGGCG
CTATCCGATG GCGCCTCAGC CATGTTAGTT ATGGAAGAGG AAAAAGCCAA GGCGTTAGGC
CTTCCTATAC GTGCCCGTAT CCGCTCTATG GCTGTTGCCG GTTGTGATGC CGCTATCATG
GGTTACGGCC CGGTACCGGC GACCAAGAAG GCGCTTGAGC GTGCTAACTT AAGTATCGAT
GATCTCGATG TAATCGAGCT CAACGAAGCC TTCGCCGCTC AGTCACTCCC TTGTGTGAAA
GAGTTAGGGC TGATGGATGT TGTCGACGAA AAGATTAACC TTAACGGTGG CGCAATTGCA
TTGGGTCACC CACTGGGTTG TTCCGGTGCT CGTATCTCTA CGACATTGAT CAACCTGATG
GAAGCCAAAG ATGCTAAATA TGGTCTGGCG ACCATGTGTA TCGGTCTTGG CCAAGGTATT
GCGACCATCT TCGAAAGACC TTAA
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| Protein sequence | MKQAVIVDCI RTPMGRSKAG VFRNVRAETL SAELMKALLV RNPQLDPNTI EDVIWGCVQQ
TLEQGFNIAR NASLLAGLPK QIGGVTVNRL CGSSMDALHQ AARAIMTGQG DTFIIGGVEH
MGHVPMNHGV DFHPGLANNV AKASGMMGLT AEMLGKMHGI TREQQDEFAV RSHQRAHAAT
VEGRFANEIH PIEGHDADGA LIKVEHDEVI RPETSMESLS GLRPAFDPAN GTVTAGTSSA
LSDGASAMLV MEEEKAKALG LPIRARIRSM AVAGCDAAIM GYGPVPATKK ALERANLSID
DLDVIELNEA FAAQSLPCVK ELGLMDVVDE KINLNGGAIA LGHPLGCSGA RISTTLINLM
EAKDAKYGLA TMCIGLGQGI ATIFERP
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