Gene Ssed_0021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0021 
Symbol 
ID5612853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp25322 
End bp25789 
Gene Length468 bp 
Protein Length155 aa 
Translation table11 
GC content48% 
IMG OID640930844 
ProductYbaK/EbsC protein 
Protein accessionYP_001471762 
Protein GI157373162 
COG category[S] Function unknown 
COG ID[COG2606] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00011] ybaK/ebsC protein 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000866016 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTCCTG CAATTGACCT CTTAAAAAAA GCACACATCA AACATACTAT TCATGAATAC 
CAGCATGAAG CCAGTGCACT GGCCTACGGG ATTGAGGCTG CGACGAAACT CAATCTCGAT
GCAAAACTGG TATTTAAAAC TTTGGTGGCC AAACTCGACA GTGGAAAGCT AGTCGTAGCG
ATTATTCCGG TTGAAGAGAA ACTTAATATG AAAGCACTTG CAAAGGTAGC TGGAGTTAAG
AAGGCCGCCA TGGCCTCGGC TGAGGAAGTC GAACGTTCTA CCGGTTATGT ATTAGGAGGG
GTGAGTCCCT TAGGTCAAAA GCGTCCTCTG TTAACCTATA TCGATACCTC GGCAGAGCAA
CTCGACCAGC TCTACGTCAG TGGTGGAAAG CGTGGCCTGG ATATAGAACT TACCCCCTCT
GCACTGTTAA AACTGACGAG AGCACTGTTT GCCCCCCTCA TCGTCTAG
 
Protein sequence
MTPAIDLLKK AHIKHTIHEY QHEASALAYG IEAATKLNLD AKLVFKTLVA KLDSGKLVVA 
IIPVEEKLNM KALAKVAGVK KAAMASAEEV ERSTGYVLGG VSPLGQKRPL LTYIDTSAEQ
LDQLYVSGGK RGLDIELTPS ALLKLTRALF APLIV