Gene Ssed_0017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0017 
Symbol 
ID5609690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp19576 
End bp20742 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content45% 
IMG OID640930840 
Productchloramphenicol O-acetyltransferase 
Protein accessionYP_001471758 
Protein GI157373158 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000020169 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTCATA AAAGCGCTGC CTTTATTTGG TGTTCTAACT ACGTCTTTCA GTTCTTCTTT 
TGTTTTGGAA TTTTTCTCCC TTTTTATCAA CTCTGGTTGA GTGAGCAGGG GATGGGAAGT
GAGAGCATAG GTATTATTCT GGCCGTGGGC TTAATGAGTC GCTGCGTAGC AAGCATAGTC
GGTGGGATAT TAGCCAAACA TGAGAGTCAG TACCAAAACG TACTAAGAGT GGTCAGCGCT
TTGGGTTTGT GTACCGCCGT CTCTATGGTT TATTGGAGCC CGAGTTTTTA TCATCTGTTG
ATACTCACGG TATTGTTTAA TGCCGCCATA GCTCCTGTGT TTGGATTATC CGATGCAATT
ATAGCTACCT TAGACAAGAG AAAAATTCTC AGCTACGGAC CGACCCGCAT GTGGGGATCG
CTTGGTTTTG TCGGTGCAAC TGTGGTTGGT GGCTATTGCT TTGAACTCTG GACCATCAGT
GTTCTGCCTA TCATTCTCAT CATCAGCTGT AGCCTGATGC TCTTTTCGGT AACTCTAAAG
TGCCCTGATC TGCAGACAGC TCGGTCGCAA CATAAAGTTT TAGAAGAAGA TGGAAAGCAC
TGGCTTGGTG CCGAACTTAT CCTCTTGTTG GGAATATTAT CTTTACTGCA GGGAAGTCAT
GGCTTCTTTT ACGGATTCAG CTCCGTATAT TGGCAAGAGA TAGGTATAGC AGAAGGGGTT
ATTGGATACC TGTGGGGAAT ATCTATAGTC AGTGAGATTC TGGTGTTTAT CTTTGCTAAG
AAGGCTTTTA GTAATGTGTC GCCTAAGCTG TTACTTCAAA TTGCCAGTGC TGGGGTTCTT
GTGCGTTGGG GAGCGCTCTC ACTTGCTGAG CAACCTTTGT ATATCGCATT GAGTCAAACA
CTGCATGGGG TGACGTTTGC TATGACCCAT CTTGCAGCAA TTAAGTCTAT TCAGCTGTAC
CTGCCCGAAT CTCAGATGGC AAAATTTCAA GGTTTGTATA ACGGTCTATA TATGGCGGTG
ACGGCACTCG TTACCTTCAT CACAGGTTAC CTGTTCGATA GCCTTAAAGC CGATCTGTTT
ATCGCGATGG CGCTTTTTGG TGTGGTTGGG TTTGTGCTCA CCTTTTCTTT GAATCTGAAA
CCGATCAAAA ATCCCGTCAC GGTATAA
 
Protein sequence
MSHKSAAFIW CSNYVFQFFF CFGIFLPFYQ LWLSEQGMGS ESIGIILAVG LMSRCVASIV 
GGILAKHESQ YQNVLRVVSA LGLCTAVSMV YWSPSFYHLL ILTVLFNAAI APVFGLSDAI
IATLDKRKIL SYGPTRMWGS LGFVGATVVG GYCFELWTIS VLPIILIISC SLMLFSVTLK
CPDLQTARSQ HKVLEEDGKH WLGAELILLL GILSLLQGSH GFFYGFSSVY WQEIGIAEGV
IGYLWGISIV SEILVFIFAK KAFSNVSPKL LLQIASAGVL VRWGALSLAE QPLYIALSQT
LHGVTFAMTH LAAIKSIQLY LPESQMAKFQ GLYNGLYMAV TALVTFITGY LFDSLKADLF
IAMALFGVVG FVLTFSLNLK PIKNPVTV