Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0017 |
Symbol | |
ID | 5609690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 19576 |
End bp | 20742 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640930840 |
Product | chloramphenicol O-acetyltransferase |
Protein accession | YP_001471758 |
Protein GI | 157373158 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000020169 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTCATA AAAGCGCTGC CTTTATTTGG TGTTCTAACT ACGTCTTTCA GTTCTTCTTT TGTTTTGGAA TTTTTCTCCC TTTTTATCAA CTCTGGTTGA GTGAGCAGGG GATGGGAAGT GAGAGCATAG GTATTATTCT GGCCGTGGGC TTAATGAGTC GCTGCGTAGC AAGCATAGTC GGTGGGATAT TAGCCAAACA TGAGAGTCAG TACCAAAACG TACTAAGAGT GGTCAGCGCT TTGGGTTTGT GTACCGCCGT CTCTATGGTT TATTGGAGCC CGAGTTTTTA TCATCTGTTG ATACTCACGG TATTGTTTAA TGCCGCCATA GCTCCTGTGT TTGGATTATC CGATGCAATT ATAGCTACCT TAGACAAGAG AAAAATTCTC AGCTACGGAC CGACCCGCAT GTGGGGATCG CTTGGTTTTG TCGGTGCAAC TGTGGTTGGT GGCTATTGCT TTGAACTCTG GACCATCAGT GTTCTGCCTA TCATTCTCAT CATCAGCTGT AGCCTGATGC TCTTTTCGGT AACTCTAAAG TGCCCTGATC TGCAGACAGC TCGGTCGCAA CATAAAGTTT TAGAAGAAGA TGGAAAGCAC TGGCTTGGTG CCGAACTTAT CCTCTTGTTG GGAATATTAT CTTTACTGCA GGGAAGTCAT GGCTTCTTTT ACGGATTCAG CTCCGTATAT TGGCAAGAGA TAGGTATAGC AGAAGGGGTT ATTGGATACC TGTGGGGAAT ATCTATAGTC AGTGAGATTC TGGTGTTTAT CTTTGCTAAG AAGGCTTTTA GTAATGTGTC GCCTAAGCTG TTACTTCAAA TTGCCAGTGC TGGGGTTCTT GTGCGTTGGG GAGCGCTCTC ACTTGCTGAG CAACCTTTGT ATATCGCATT GAGTCAAACA CTGCATGGGG TGACGTTTGC TATGACCCAT CTTGCAGCAA TTAAGTCTAT TCAGCTGTAC CTGCCCGAAT CTCAGATGGC AAAATTTCAA GGTTTGTATA ACGGTCTATA TATGGCGGTG ACGGCACTCG TTACCTTCAT CACAGGTTAC CTGTTCGATA GCCTTAAAGC CGATCTGTTT ATCGCGATGG CGCTTTTTGG TGTGGTTGGG TTTGTGCTCA CCTTTTCTTT GAATCTGAAA CCGATCAAAA ATCCCGTCAC GGTATAA
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Protein sequence | MSHKSAAFIW CSNYVFQFFF CFGIFLPFYQ LWLSEQGMGS ESIGIILAVG LMSRCVASIV GGILAKHESQ YQNVLRVVSA LGLCTAVSMV YWSPSFYHLL ILTVLFNAAI APVFGLSDAI IATLDKRKIL SYGPTRMWGS LGFVGATVVG GYCFELWTIS VLPIILIISC SLMLFSVTLK CPDLQTARSQ HKVLEEDGKH WLGAELILLL GILSLLQGSH GFFYGFSSVY WQEIGIAEGV IGYLWGISIV SEILVFIFAK KAFSNVSPKL LLQIASAGVL VRWGALSLAE QPLYIALSQT LHGVTFAMTH LAAIKSIQLY LPESQMAKFQ GLYNGLYMAV TALVTFITGY LFDSLKADLF IAMALFGVVG FVLTFSLNLK PIKNPVTV
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