| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0013 |
|---|
| Symbol | |
|---|
| ID | 5609756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 14650 |
|---|
| End bp | 15705 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640930836 |
|---|
| Product | putative signal transduction protein |
|---|
| Protein accession | YP_001471754 |
|---|
| Protein GI | 157373154 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1639] Predicted signal transduction protein |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000000360962 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGTCATAA AATTATTCCA GAAAATCTTC AATATCAGAG ATAATGCTGT CGTTTCTCAG
CCTAAAAGTT TCAGTCAGAA CCCTGAATTA CAGCAGATAT CAAGCAACAA ACCTAAGGCG
AGTCTTGAGC CGTTAAGTGC TGTTGAAGAC TCTGTCGATG TTTCGGCACT CTTCTATAGC
CTGCTTTTTC CTGCAAGACA AAAAGATCAG GGAGGGGTCG CTAATAACTT AGAGAAAAAT
GTCATCGGCG ATGTGGAACG AGCCTTGTCT TCGCCTATGG CGATTGCAGA AAATGTGCTT
AAGTTGCCGA CTCGTATGGC TGAACTTAAT AAGAAACTGG GCGATGAAAG TGTCGATATC
AAGGTATTAC TCGAACTCAT GCAGAAAGAT CCTGTACTGA GTGTAGAGGT TCTCAAGCTA
TGTAACTCTC CCGTCTTTAA GCGTTCAGAG AGAGAGGTGA CAAGCCTTCA GCAAGCCTTC
GTGCAGTTAG GTCGAGATCA ATTAAGGCGT TTCGTTACTA CCTCTCTGGT ACGGGAGATG
ATAGAGATAA AACCCATCTA TTATCGACGC TTTGGTTTAC AGATATGGCG TCACTCTATG
CAGGTGGCAT TTTTGTCTTC TGAGTTAGCG GGTGAGTTGT CAAATGATGA TCCCGATACA
GCCTTTATGT TAGGTCTGCT CCATGATGTG GGTAAGATAG CTATCTTTAA GATGTTGTTG
GATGAGTTTA ACTTAGCCGA TCCCGGTGAG CAGCCCTGTT CCTCTCTGTT TAGACAGGTG
ATGACCTCTA AGTCATTAAG TTTAAGCGCA CTTCTGGCTC GGTGTTGGCA GTTGCCGGCA
AGTTTTGAGG TAACTCTGAA CGCATTAGCC AATACGAGTG CTAAGCCAAC CGAAAGACTT
GCCGCCGTAG TCTGGAGGGC TAACTTAATC AGCGAGTGCT CTATGCTACA TCAAGCCGGA
AAGTTAGATG AGTTCGGTTT AAACCGTTTA CTCATCGATG CAGATCTAAC ACGGGAAGAG
TTTGATCTCT TTCATGAGAA GCTGAAAGAG TTTTAA
|
|---|
| Protein sequence | MVIKLFQKIF NIRDNAVVSQ PKSFSQNPEL QQISSNKPKA SLEPLSAVED SVDVSALFYS
LLFPARQKDQ GGVANNLEKN VIGDVERALS SPMAIAENVL KLPTRMAELN KKLGDESVDI
KVLLELMQKD PVLSVEVLKL CNSPVFKRSE REVTSLQQAF VQLGRDQLRR FVTTSLVREM
IEIKPIYYRR FGLQIWRHSM QVAFLSSELA GELSNDDPDT AFMLGLLHDV GKIAIFKMLL
DEFNLADPGE QPCSSLFRQV MTSKSLSLSA LLARCWQLPA SFEVTLNALA NTSAKPTERL
AAVVWRANLI SECSMLHQAG KLDEFGLNRL LIDADLTREE FDLFHEKLKE F
|
|---|
| |