| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0010 |
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| Symbol | |
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| ID | 5609753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 11580 |
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| End bp | 12326 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640930833 |
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| Product | LamB/YcsF family protein |
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| Protein accession | YP_001471751 |
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| Protein GI | 157373151 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1540] Uncharacterized proteins, homologs of lactam utilization protein B |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000255714 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTTATCAA ATCCGAAAGG TTACCCCATA GATCTCAACG CAGATCTTGG TGAAGGCAGT
GAGTTTGACG CTGAGCTGCT ATTACTTATC ACCTCGGCAA ATATCGCCTG TGGAGGTCAT
GCCGGCGATC CTCTGAGCAT GCGAAAGACG GTTATTCAAG CACTTAAGAG CAAGGTCAAT
GTTGGCGCTC ACCCCAGCTT TCCCGATCGA GAGAATTTTG GCCGCGTGAG TATCGATATC
TCAGGTAAGC AACTATCAGA CTCAATCTAT CAACAAATAA TGGCATTGAG AGCCATCTGT
GATGAACTGG GAGCTAAATT GTTTCACGTG AAACCTCACG GAGCCTTTTA TAATGAAGTC
GCCAAGGATA AGGTTTTAGG ACGTATTTTA ATTGATGTGA TTAAGCGAAT AGACCCGGAG
CTTAAATTAA TGATCTTAGC CGGGAGTCCC TTGGTTAAAC AAGCCCGGCA ACATGGACTC
ACGGTTATCG AAGAGGCATT TGCCGATCGC ACTTACCTTA GTGACGGCTC ACTCGCTCCC
CGCAGCGAAG TTGGCGCCGT GATACATGAC CCTCAACAGG CATTACAGCA GGTACGACAA
ATTGTCGGAA ATATGCCAGT GACAACCTTA GGCGGGCAAC CGATCATCAT AAATGCCACC
AGCATCTGCC TGCATGGCGA TAATCAGCAG GCCCTGGAGT TTGCAAAGCT GATAAGTGAA
AATCTAACCG AAGCAAGAAA ACCGTAG
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| Protein sequence | MLSNPKGYPI DLNADLGEGS EFDAELLLLI TSANIACGGH AGDPLSMRKT VIQALKSKVN
VGAHPSFPDR ENFGRVSIDI SGKQLSDSIY QQIMALRAIC DELGAKLFHV KPHGAFYNEV
AKDKVLGRIL IDVIKRIDPE LKLMILAGSP LVKQARQHGL TVIEEAFADR TYLSDGSLAP
RSEVGAVIHD PQQALQQVRQ IVGNMPVTTL GGQPIIINAT SICLHGDNQQ ALEFAKLISE
NLTEARKP
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