| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0009 |
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| Symbol | |
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| ID | 5609752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 8689 |
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| End bp | 11130 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640930832 |
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| Product | DNA topoisomerase (ATP-hydrolyzing) |
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| Protein accession | YP_001471750 |
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| Protein GI | 157373150 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.983538 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000705515 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAATAACC GACGAGAGAA TAATATGTCA GAGAACAGTT ACGATTCTTC CAGTATTAAG
GTACTAAAAG GCCTTGATGC AGTACGGAAG AGACCCGGGA TGTATATCGG TGATACCGAC
GACGGCACTG GTCTACATCA TATGGTATTC GAAGTAGTCG ATAACTCAAT CGATGAAGCC
TTAGCGGGCC ATTGTAATGA CGTTATCATC ACTATCCATG CCGATGGTTC TGTATCGGTA
AAAGATGATG GTCGTGGTAT TCCTGTTGCG ATTCACCCTG AAGAGGGCAT ATCTGCAGCC
GAAGTTATTA TGACGGTACT CCATGCCGGC GGTAAGTTCG ATGATAACTC ATACAAAGTG
TCTGGTGGTC TTCACGGTGT AGGTGTTTCT GTTGTAAATG CACTATCTCA CAAGCTACAG
CTGACTATTC GTCGTGACGG TAAGCTTTAT GAGCAGTTTT ACACTCATGG TGAGCCAGAT
GAGCCCATTA AAGCTATCGG TGATGCAACC AATACTGGTA CGGAGATTCG TTTCTGGCCA
AGTACAGATA CCTTCACCGA TGTATTGTTC CATTTCGATA TCTTAGCCAA GCGTGTTCGT
GAACTTTCGT TCCTAAACTC CGGTGTAGGT GTTCGTCTTG TCGATGAGCG TGATAATCGT
GATGAGTTTT TCAAATACGA TGGTGGTATC AGTGCCTTCG TTGATTACTT GAACGTTAAC
AAGACTCCGG TAAACAAAGA AGTTTTCCAC TTCATCCAAG AGCGCGATGA CGGTATTACC
GTAGAAGTTG CTATGCAGTG GAATGATGGT TTTCAGGAGA ATATCTTCTG TTTTACCAAC
AACATTCCTC AGCGTGATGG TGGTACTCAC CTTGCTGGTT TCCGCGGTGC TTTGACCCGT
AACCTAAACA CCTATATGGA GCGTGAAGGT TACAATAAGA AGGGTAAGAC TGGCGCGACC
GGTGATGATG CCCGTGAAGG TCTGACAGCA GTTATCTCTG TTAAAGTTCC AGATCCTAAG
TTCAGTTCTC AGACTAAAGA CAAGCTGGTT TCGAGTGAAG TGAAGTCTGC TGTTGAGCAA
ACAATGGGTG AGCAGTTAGG TGATTACCTG ATGGAGCATC CAAACGAAGC TAAATTAATT
GTCGGTAAGA TTATTGATGC GGCTCGTGCT CGTGAAGCGG CGCGTAAAGC CCGTGAAATG
ACTCGTCGTA AAGGCGCGTT AGATCTGGGT GGTCTGCCAG GGAAACTTGC CGATTGCCAA
GAGAAAGACC CTGCGCTTTC TGAAATATAC ATAGTGGAAG GAGACTCTGC TGGCGGTAGC
GCCAAGCAGG GGCGTAACCG TAAGAACCAA GCGATTCTGC CACTTAAAGG TAAGATTTTA
AACGTTGAGA AGGCACGTTT CGATAAGATG CTCTCTTCTC AAGAAGTGGC AACGCTTATC
ACTGCACTAG GTTGTGGTAT TGGCCGTGAT GAATACGATC CGGATAAAAC GCGTTACCAT
AACATCGTCA TCATGACCGA TGCCGACGTC GATGGCTCGC ACATCCGTAC CTTGCTATTG
ACCTTCTTCT TCCGTCAAAT GCCTGAGCTC ATCGAGCGTG GCTTTGTTTA TATTGCCCAG
CCACCGCTTT ATAAAGTTAA GAAAGGTAAG CAAGAACAGT ACCTTAAAGA TGACCCAGCA
TTGACTGAGT TTTTGACTAA TTTAGCGTTA GACGGTGGTG AAATCCATGC GTCTGCCAAT
GCGCCGGCCA TGTCTGGCGC ACCACTAGAG AAGCTGGTTT ATCAGTATCG TGAAGTTGAA
GCTATCTTTG ACCGCTTAGA TCAGCGCTAC CCATTGATGT TAACTGAGCG CATGCTATAT
CACCCAGCAT TGAGTAACGA TGTTTTAGCC GATGAAGCTA AGGTTCAGCA GTGGTGTGAT
GCCTATGTTG CCGATCTGGC AGAGAAAGAG TCTGGTGGGT ATATCTTTAG TGGAGAAGCC
TTCCTGGAGC CTGAACGTCA AGTGTATCTT CCTAAGATCA CTATTCGTAA GCACGGTATC
GATACTCACT ATCTGTTCTC GTATGACTTC CTGCAGTCGA GCGATTATGA GCGTATGGCA
AAACTTGCTA CTGCGCTTGA TGGCTTAATT GAAGAGGGCG GCTATGTTAA ACGTGGTGAG
CGCCTGAAAG AAGTTTCCAG CTTCGTTGAG GCACTCGATT GGTTAATGAA TGACTCCAGG
CGTGGTCTTT ATATACAACG ATACAAAGGA TTGGGTGAGA TGAACCCAGA GCAATTATGG
GAAACCACCA TGGATCCTGA GTCTCGTCGT ATGCTAGTGG TTACGATTGA AGATGCGATT
GCTGCCGATC AGTTGTTTAC CTGCTTGATG GGCGATCAGG TTGAGCCACG TCGTGAATTT
ATCGAATCAA ATGCGCTGAA CGTAGCTAAC TTGGATGTCT AG
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| Protein sequence | MNNRRENNMS ENSYDSSSIK VLKGLDAVRK RPGMYIGDTD DGTGLHHMVF EVVDNSIDEA
LAGHCNDVII TIHADGSVSV KDDGRGIPVA IHPEEGISAA EVIMTVLHAG GKFDDNSYKV
SGGLHGVGVS VVNALSHKLQ LTIRRDGKLY EQFYTHGEPD EPIKAIGDAT NTGTEIRFWP
STDTFTDVLF HFDILAKRVR ELSFLNSGVG VRLVDERDNR DEFFKYDGGI SAFVDYLNVN
KTPVNKEVFH FIQERDDGIT VEVAMQWNDG FQENIFCFTN NIPQRDGGTH LAGFRGALTR
NLNTYMEREG YNKKGKTGAT GDDAREGLTA VISVKVPDPK FSSQTKDKLV SSEVKSAVEQ
TMGEQLGDYL MEHPNEAKLI VGKIIDAARA REAARKAREM TRRKGALDLG GLPGKLADCQ
EKDPALSEIY IVEGDSAGGS AKQGRNRKNQ AILPLKGKIL NVEKARFDKM LSSQEVATLI
TALGCGIGRD EYDPDKTRYH NIVIMTDADV DGSHIRTLLL TFFFRQMPEL IERGFVYIAQ
PPLYKVKKGK QEQYLKDDPA LTEFLTNLAL DGGEIHASAN APAMSGAPLE KLVYQYREVE
AIFDRLDQRY PLMLTERMLY HPALSNDVLA DEAKVQQWCD AYVADLAEKE SGGYIFSGEA
FLEPERQVYL PKITIRKHGI DTHYLFSYDF LQSSDYERMA KLATALDGLI EEGGYVKRGE
RLKEVSSFVE ALDWLMNDSR RGLYIQRYKG LGEMNPEQLW ETTMDPESRR MLVVTIEDAI
AADQLFTCLM GDQVEPRREF IESNALNVAN LDV
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