| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0002 |
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| Symbol | |
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| ID | 5610173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1997 |
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| End bp | 3631 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640930825 |
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| Product | 60 kDa inner membrane insertion protein |
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| Protein accession | YP_001471743 |
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| Protein GI | 157373143 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000135714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000155498 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTTATC GGTCTGCTTT TTGTCAGCTT TTTGCTATGG
CAACAGTGGC AGACTGATCA GGCCCCACAA CCGGTAGCGA TGGAATCTTC ATCAACTATT
CCGTCTTCGT CTACTTCAGA TTCTCACAGC TCTGACGTTC CAGATGCCGA CTCAGCACTT
CCTGCTGCTG TTGTTGCTTC TAAAGAACTC ATCACAGTGA ACACCGATCA GTTAATCATT
AAGATTAACC CTATCGGTGG TGATATCGTT TATTCCGCAC TCGTTGAACA CAAACTTGAG
CTGGATAAAG ACGAGCCTTT TGTTCTTTTA GAACAAACGA AAGATATAAA CTACATTGCT
CAAAGTGGTC TTATCGGTCG TAACGGTATC GACAGCAGCT CTAAGGGCCG TGCACACTTC
GACAGTGCTT CACGCGAATA CACCTTAGCC TCTGGCCAGG ATACCTTAGA AGTTCCGCTT
ACTTTCGTTG CCGACAATGG TGCGACTTAC ACTAAGATGT TTGTCTTCCA TCGTGGGCAA
TTTAAAGTGG ATGTCGACTA TGTCATCGAC AACAGCACTG ACCAACAGCT GCAAGTTCAG
ATGTACGGTC AGATTAAGCA CAGCATCAAG CAAAGCGAAA GCAGCATGAT GATGCCGACT
TACCGTGGTG CCGCTTTCTC TACTGCAAAT ACTCGCTACG AAAAGTACAG CTTCGATGAT
ATGGCTGATA AGAACCTGGA TGAGAAAACA TTAGGTGGTT GGGCTGCAAT GCTTCAACAC
TACTTTGTTT CTGCTTGGGT ACCACCAGCC AACGATCAGA ACATTATTTT CTCCAGCATC
AGTGCCGGTG GACAAGCCAA TATCGGTTTC CGTGGTGCAG TCTATGATGT CGCGCCGGGT
GCAACTCAAA CGATCAACTC TGAGTTTTAT GTTGGTCCTA AGAATCAAGA AGCCCTATCG
GCCATCTCTG AATCACTTAA CCTGGTAGTC GATTACGGTT TCCTTTGGTG GTTAGCCGTA
CCTATCTACA AGTTACTGAT GTTCTTCCAG TCATTAGTCA CTAACTGGGG TCTTGCGATT
ATCCTTATCA CGTTAACCGT ACGTGGTATG TTGTACCCGT TAACGAAAGC TCAGTACACC
TCTATGGCTA AGATGCGTAA CCTGCAACCT AAGCTTGCTG AGATGAAAGA GCGCTTCGGT
GATGACCGTC AGAAGATGGG TCAGGCGATG ATGGAGCTGT ACAAGAAAGA GAAAGTAAAC
CCTATGGGTG GCTGTCTTCC TATCTTGCTA CAGATGCCAA TCTTCATCGC CCTATACTGG
GTACTGCTGG AGAGTGTTGA GCTACGTCAC GCGCCATTCA TGCTTTGGAT CACCGACCTT
TCGGTACAAG ATCCATACTA TGTAATGCCA ATCCTGATGG GTATCTCGAT GTTCGTCATG
CAGAAGATGC AGCCAATGGC ACCGACGATG GACCCAATGC AACAGAAGAT GATGCAGTGG
ATGCCGGTAG TATTTACCGT ATTCTTCCTA TGGTTCCCTG CAGGTCTGGT ACTTTACTGG
TTAGTCGGTA ACTTAGTTGC GATTACGCAG CAGAAGATTA TCTATGCCGG TCTGGCGAAG
AAAGGCTTAA AATAG
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| Protein sequence | MESQRNILLI GLLFVSFLLW QQWQTDQAPQ PVAMESSSTI PSSSTSDSHS SDVPDADSAL
PAAVVASKEL ITVNTDQLII KINPIGGDIV YSALVEHKLE LDKDEPFVLL EQTKDINYIA
QSGLIGRNGI DSSSKGRAHF DSASREYTLA SGQDTLEVPL TFVADNGATY TKMFVFHRGQ
FKVDVDYVID NSTDQQLQVQ MYGQIKHSIK QSESSMMMPT YRGAAFSTAN TRYEKYSFDD
MADKNLDEKT LGGWAAMLQH YFVSAWVPPA NDQNIIFSSI SAGGQANIGF RGAVYDVAPG
ATQTINSEFY VGPKNQEALS AISESLNLVV DYGFLWWLAV PIYKLLMFFQ SLVTNWGLAI
ILITLTVRGM LYPLTKAQYT SMAKMRNLQP KLAEMKERFG DDRQKMGQAM MELYKKEKVN
PMGGCLPILL QMPIFIALYW VLLESVELRH APFMLWITDL SVQDPYYVMP ILMGISMFVM
QKMQPMAPTM DPMQQKMMQW MPVVFTVFFL WFPAGLVLYW LVGNLVAITQ QKIIYAGLAK
KGLK
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