| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_1841 |
|---|
| Symbol | dapF |
|---|
| ID | 5597359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter concisus 13826 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009802 |
|---|
| Strand | + |
|---|
| Start bp | 10628 |
|---|
| End bp | 11371 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640928614 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001465937 |
|---|
| Protein GI | 157163987 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTCT CAAAATATAA CGCCAGCGGC AACGATTTTG TCATATTTCA CACATTTTTG
AGCAAAGATA GAAGCGAGCT TGCAAGGCAG ATTTGCAGCA GAACAAACGG CGTGGGAGCT
GACGGGCTCA TCGTGCTTTT GCCTTACGAA AAGGGCGTGA AATGGGAGTT TTATAACAGC
GACGGAAGCT ACGCTGCGAT GTGTGGCAAC GGCTCGCGTG CGGCTGCTAG ATATGCCTAT
CTAAACGGCC TTGTAAGTTC AAGCGAATTT GCTCTGCTAA CTGGCAGCGG TGAGGTGATG
GCAAGCGTGA AAGATGAGTG CGTCGAGGTC GTGCTAACAA GCCCAAAAAT TTTAAGCGAA
CCACTAAATG AAGGTGGCAA AACTTGGTAC TTTTACGATA CTGGCGTGCC TCATCTTGTA
AATTTCACGC AAAATTTAGA TGAATTTGAC GTCAAAGAGT GCAGGGTGCT TCGCCAAAAA
TACAATGCAA ATGTAAATTT AGCCAAATTT GATGGCGGTG TTTTAAAAGT AAGAACCTAC
GAAAGGGGCG TGGAGGACGA GACGCTAGCT TGTGGCACTG GCATGGCGGC TTGCTTTTAC
GGCGCTACTT TAAATTTAAA CGCAGCACAA TGTCTAAAAG TCTATCCAAA AAGCGGCGAA
GAGCTTGGCC TTAGGCTAGA AAACGGCAAA ATCTTATTTA GCGGAGCAGT TAAACACTGC
TTTGATACGA GTATCGAAAT TTAG
|
|---|
| Protein sequence | MQVSKYNASG NDFVIFHTFL SKDRSELARQ ICSRTNGVGA DGLIVLLPYE KGVKWEFYNS
DGSYAAMCGN GSRAAARYAY LNGLVSSSEF ALLTGSGEVM ASVKDECVEV VLTSPKILSE
PLNEGGKTWY FYDTGVPHLV NFTQNLDEFD VKECRVLRQK YNANVNLAKF DGGVLKVRTY
ERGVEDETLA CGTGMAACFY GATLNLNAAQ CLKVYPKSGE ELGLRLENGK ILFSGAVKHC
FDTSIEI
|
|---|
| |