| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_1639 |
|---|
| Symbol | |
|---|
| ID | 5597412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter concisus 13826 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009802 |
|---|
| Strand | - |
|---|
| Start bp | 161099 |
|---|
| End bp | 164224 |
|---|
| Gene Length | 3126 bp |
|---|
| Protein Length | 1041 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640928771 |
|---|
| Product | multidrug resistance protein MdtF |
|---|
| Protein accession | YP_001466087 |
|---|
| Protein GI | 157164758 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0267869 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCAA GATTTTTCAT AAACCGCCCG ATATTTGCAA CTGTTATATC TATCATCATA
GTTATAGCAG GTTTTATGGG TATCAAGGGG CTTCCGATAG AGGAGTATCC AAGTCTTACT
CCGCCTACTG TCTCTGTAAG TGCGACATAT AGCGGTGCTG ATGCGCAGAC GATCGCTGAC
TCAGTCGCAA GTGCGATCGA AGATCAGATA AATGGTGTTG AAAATATGCT TTATATGCAA
AGCACCTCAA GCTCAGCAGG TACTATGAAT ATAAGCGTAT ATTTTAAGAT CGGCTCATCA
GCAAAGCAAG CAACGATCGA TGTAAATAAC CGCGTGCAAG CTGCCCTTTC AAGATTGCCT
CAAGAGGTGC AAAATATGGG TGTAACGGTG CGCGAAAGAA GTGGCTCGAT CCTTCAAGTA
GTTGGCTTTA CAAGTCCAAA TATGAACCAA GTTGAGCTAT ATAACTATGT AAATTTAAAC
ATCGCTGATG CGATCAAAAG GGTAAATGGC ATCGGCGATA CAGTGCTAAT TGGCAACAAA
GAGTATTCGA TGAGAATTTG GCTAAAGCCA GACAGACTTG CTCAGTTTAA ACTAACTCCA
AGCGACGTCA TCTCTCAAGT AAGAATTCAA AACTCACAAT ACGCAGCTGG CAAAATCGGC
GAGCAGCCAT CAAAAGGTGA AAATCCTTAT GTTTATTCAG TAGTTTCTGA AGGTCGTTTT
AAAGATCCAA AGCAGTTTGG TGAAATTTTG ATAAAAAGTG ATGACGGCAC AGTCGTCAAG
CTAAAAGAGG TCGCCACAGT CGAGCTTGGA GCTGCTAGCT ACGCATCTGA AGCTATGCTA
AATGGCAAGC CAGCAGTGCC ACTTTTACTA TTTTTACAAA ACGATGCAAA CGCACTTGCA
ACGGCTGAAG CGGTCAAAGC AAAGCTTGAA GAGCTAAAGA AAACCTACCC AGTTGGCCTA
GAGCACACGA TAGCTTATAA TCCAACTGAA TTTATCACCG TCTCAATAGA CGAAGTTATA
AAAACTTTCG TAGAAGCGAT GGTGTTAGTT CTTATCGTAA TGTACTTCTT CTTAAAGAGC
TTTAGAGCTA CCATCATACC GATGCTTGCT GTGCCAGTCT CTATCATAGG CACATTTGGC
GGGCTTTATG TGATGGGCTT TAGTATAAAT TTGATCACAC TTTTTGCCCT GATCCTAGCT
ATCGGTATCG TCGTGGATGA CGCGATCATC GTTATAGAAA ACGTCGAGAG AATTTTGCAC
GAAGATAAAG AGATAAGCGT AAAAGACGCG ACATTTAAGG CGATGGAGGA GGTGCAAGCT
CCGGTTATCT CTATCGTGCT CGTGCTTTGC GCAGTTTTCG TGCCAGTTTC ATTTATGGAG
GGCTTTGTTG GCGTTATACA AAAGCAGTTT GCGCTAACAC TTGTTGTCGC CGTTTGTATC
TCAGGCTTTG TCGCTCTTAC GCTTACGCCA GCGCTTTGTG CGGTTATGCT TAAAAAGCAA
GAGAACAAGC CATTTTGGAT CGTTCAGAAA TTTAACGACT TTTTTGACTT TAGCACTAAG
CTCTTTACAG CTGGTGTGGC AAAAATTTTA AAACACGTCA TCATTAGCTT TATAGTAATT
GGCATAATGG GATTTGCAAC GTATGGCTTG TTTCAAAAGG TGCCAAAAGG GCTTGTGCCT
TCAGAAGACA AGGGCGCTTT GATGGTTATC ACCTCGCTTC CACCTTCAAC AAATATGCTA
AAGACTAAAG AAGAGGTAAA ATCTATTAGT AACGCCATTT TGAGCAATCC AAATGTCGAA
TTTACTATGG GCGTTGCAGG TTATGATATG CTAGCTAGCT CACTTAGAGA AAACTCAGCC
ATTAGCTTTA TCAAGCTAAA AGACTGGAGC GAGAGAAAAG GTGCAACAGA CGGCGCAGAT
GCCTTAGTTG GTCAGTTTAA CGGCATGCTT TGGGGCTCTA AAAACTCAAT GACCTTTGTC
GTAAACGTGC CACCTATCAT GGGTCTATCA ATGACTGGCG GCTTTGAGAT GTATCTACAA
AACAAAAGTG GCAAGAGCTA CAACGAGATA GAAGCAGACG CTAGAAAGGT GACAGCGGCA
GCAAATGCAA GACCTGAGCT AACTGGCGTG AGAACGACGC TTGAGACAAA CTACCGCCAG
TTTAAGATAA CTGTTGATAA AGAGAAAGCA AAGCTATTTG GCGTAAGCGA GAGCGAAATT
TTTAGCACGA TAGCGGCTAG CTTTGGCTCT TACTACATAA ACGACTTCAA CCTTGCGGGT
AAATCATACC GCGTATATGC AAGGGCAAGC GATAACTTTA GAAACAACCC TGAGGATCTA
AGAAAAATTT TCGTCCGCTC ATACGAGGGC GGCATGGTGC CATTAAATTC AGTAGCAACG
CTTACAAGAT CTATCGGACC TGATATCGTT GATAGATTTA ACCTCTTTCC GGCAGCTAAG
ATCATGGGTG ATCCAAAAAC TGGCTATACA TCAGGCGATG CGATAAGAGC GATACAAGAG
GTCGTAAATG ACACACTAAG TAGTGATGAG TACGCTATAA GCTGGGCTGG AACGGCGTAT
CAAGAGGTAA ATTCTCAAGG AACAGGCACG GTCGCCTTTA TCTTTGGTAT GGTCTTTGTC
TTTTTGATCC TTGCGGCTCA GTACGAAAGA TGGCTCATCC CACTTGCAGT CATCACTGCC
GTGCCGTTTG CAGTATTTGG CTCGTTGCTA GCTGTTTGGA TAAGAGGGCT GACAAACGAT
ATCTACTTTG AGATCGGACT CTTGCTACTC ATCGGCCTAG CGGCCAAAAA CGCCATTTTG
ATCGTAGAAT TTGCTATGCA AGAGCGCGAG AGTGGAAAGA GCATATTTGA ATCAGCTGTA
AATGCGGCCA AACTTCGCTT TAGACCTATC GTAATGACCT CGATCGCATT TACTCTAGGC
GTTTTCCCAA TGGCTATAAG CACGGGTGCT GGCGCTGCAT CTCGTCACTC ACTAGGAACT
GGCGTAGTTG GCGGCATGAT CGCTTCTACT ACGATAGCGA TATTTTTCGT GCCTATGTTT
TACTATTTGC TTGAAAATTT AAATGAAAAA TACTGGAAAA AGGGAGCAAA AAAAGATGAA
AAATAA
|
|---|
| Protein sequence | MFSRFFINRP IFATVISIII VIAGFMGIKG LPIEEYPSLT PPTVSVSATY SGADAQTIAD
SVASAIEDQI NGVENMLYMQ STSSSAGTMN ISVYFKIGSS AKQATIDVNN RVQAALSRLP
QEVQNMGVTV RERSGSILQV VGFTSPNMNQ VELYNYVNLN IADAIKRVNG IGDTVLIGNK
EYSMRIWLKP DRLAQFKLTP SDVISQVRIQ NSQYAAGKIG EQPSKGENPY VYSVVSEGRF
KDPKQFGEIL IKSDDGTVVK LKEVATVELG AASYASEAML NGKPAVPLLL FLQNDANALA
TAEAVKAKLE ELKKTYPVGL EHTIAYNPTE FITVSIDEVI KTFVEAMVLV LIVMYFFLKS
FRATIIPMLA VPVSIIGTFG GLYVMGFSIN LITLFALILA IGIVVDDAII VIENVERILH
EDKEISVKDA TFKAMEEVQA PVISIVLVLC AVFVPVSFME GFVGVIQKQF ALTLVVAVCI
SGFVALTLTP ALCAVMLKKQ ENKPFWIVQK FNDFFDFSTK LFTAGVAKIL KHVIISFIVI
GIMGFATYGL FQKVPKGLVP SEDKGALMVI TSLPPSTNML KTKEEVKSIS NAILSNPNVE
FTMGVAGYDM LASSLRENSA ISFIKLKDWS ERKGATDGAD ALVGQFNGML WGSKNSMTFV
VNVPPIMGLS MTGGFEMYLQ NKSGKSYNEI EADARKVTAA ANARPELTGV RTTLETNYRQ
FKITVDKEKA KLFGVSESEI FSTIAASFGS YYINDFNLAG KSYRVYARAS DNFRNNPEDL
RKIFVRSYEG GMVPLNSVAT LTRSIGPDIV DRFNLFPAAK IMGDPKTGYT SGDAIRAIQE
VVNDTLSSDE YAISWAGTAY QEVNSQGTGT VAFIFGMVFV FLILAAQYER WLIPLAVITA
VPFAVFGSLL AVWIRGLTND IYFEIGLLLL IGLAAKNAIL IVEFAMQERE SGKSIFESAV
NAAKLRFRPI VMTSIAFTLG VFPMAISTGA GAASRHSLGT GVVGGMIAST TIAIFFVPMF
YYLLENLNEK YWKKGAKKDE K
|
|---|
| |