| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_1425 |
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| Symbol | cas |
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| ID | 5596316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter concisus 13826 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009802 |
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| Strand | + |
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| Start bp | 1146472 |
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| End bp | 1147470 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640929697 |
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| Product | CRISPR-associated protein Cas1 |
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| Protein accession | YP_001466979 |
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| Protein GI | 157164052 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00327845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAGA GCGACAGGAC GCACTTTATA CTTAGTCCAG GTAGGCTTTA TAGACAAGAC
AACAATATCT ACTTTGAAAA ATTTTACGAA ACGGGCGCGC TTGTCGCTAG TAAAATTTTG
CCGGTAAATG CGATCGATGA AATTTACATG CTGGCAAAGG TGCAGATCGA TACCTACACC
ATCGCGTTTT TGGCGGATAA TAACATCCTT TTACACATCT TTAGCCCGTA TCAGAGCTTT
CGCGGGAATT TCTACCCAAA CACGCCAAAC TCTGTAAATA AAAGCGGCTT TGTATTGCTG
TGCCAGCTCC GCTCATTTGA TGATGCGATC AAACGTGCAT ATATCGCGCG CGAGATCACT
AGAACTCACA TCATAAATGA CGCCGCAAAC TGCAAAAGAC ACGGCGTGAA ATTTGACGTG
CAGCCTCACA TAAAGGCACT AGATGCGGCC ACTAGCGTGC CTGCTATCAT GGCGGTAGAG
GGTGCATTTC AAAAGCTCTA CTACGAAAAG TGGAACGAGA TCATCGCAGA TCAGCGAAGC
TTTAAATTTA CCGTCCGCTC AAAACGCCCG CCAGCTGATA AGATAAATAG CTTTATAAGC
TACGTAAATA CACGTATCTA CAACATCTGC CTAAGCGAAA TTTACAAGAC CGAGCTAGAT
CCTCGCATCG GCTTTTTGCA CGAGCCAAAC TACCGCGCGC TAAGCCTTCA CCTCGACCTT
GCGGAGATTT TTAAGCCGAT CTTGGGCGAT ACGCTGATTT TTAATATGCT AAATAAAAAA
GAGATCACCG CAAAGGACTT CCAAACGGAC GCTGGCAGGA TAAAATTTAG CAAAGACGCC
GTGCAAAAGA TCGAGCTAAA GATGATCTCG CGCCTTTGTG AGACGCTCAC GGTGGGTGGT
AGGGAGCTAA CGTGGAGGCA GGTGATCCGC CGCGAAGTAA ACAAGCTCAA AAAGTGCATC
TGCGAGGACG CGCCTTATGA AGGCTTTAGG TGGGAGTGA
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| Protein sequence | MQKSDRTHFI LSPGRLYRQD NNIYFEKFYE TGALVASKIL PVNAIDEIYM LAKVQIDTYT
IAFLADNNIL LHIFSPYQSF RGNFYPNTPN SVNKSGFVLL CQLRSFDDAI KRAYIAREIT
RTHIINDAAN CKRHGVKFDV QPHIKALDAA TSVPAIMAVE GAFQKLYYEK WNEIIADQRS
FKFTVRSKRP PADKINSFIS YVNTRIYNIC LSEIYKTELD PRIGFLHEPN YRALSLHLDL
AEIFKPILGD TLIFNMLNKK EITAKDFQTD AGRIKFSKDA VQKIELKMIS RLCETLTVGG
RELTWRQVIR REVNKLKKCI CEDAPYEGFR WE
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