Gene CCC13826_0496 details

Gene Information

• Locus tag: CCC13826_0496
• Symbol: mnmC
• ID: 5597299
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter concisus 13826
• Kingdom: Bacteria
• Replicon accession: NC_009802
• Strand: -
• Start bp: 1505041
• End bp: 1506906
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 640930057
• Product: 5-methylaminomethyl-2-thiouridine methyltransferase
• Protein accession: YP_001467336
• Protein GI: 157164134
• COG category: [E] Amino acid transport and metabolism; [S] Function unknown
• COG ID: [COG0665] Glycine/D-amino acid oxidases (deaminating); [COG4121] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAATG CAAATTTAAG CTTTAAAGGG CAAATTCCAT TTAACGAAGA GTTTGACGAC 
ATCTACTTTA ACACCGAAAA ACCTTGGCTT GAGAGCGAAT TTGTCTTTAC GAGCGCACTT 
GATGAAATTT GGCAGAGCAA AGATAGCTTT ATAGTCGCTG AGACTGGCTT TGGTGCTGGG 
CTAAATTTCT TCACGCTTTG TAAGAAATTT AAAAATAGCT CCAAAAAGCT TCACTTTGTT 
AGCATCGAAA AAAGCCCTAT AAAAAAAGAA GATCTTTTAA AAATTTATGA AAATTTAGGC 
ATTTTTAAAG CTTATGTTAA AAAGCTAGTT TCGCTCTATC CACCACTAAT CTCAGGCATA 
CACCGCATAA ATTTCGCACC AAATATCACC CTTGATCTTT GCTACGGCGA GGCAGATCAA 
ATTTTGCCTG AGCTTGATTT TGCCGCCGAT ATCTGGTTTT TAGACGGCTT TGCCCCAAGC 
AAAAATGGCT CGATCTGGAG CGAGGATGTC TTTAAGCAGA TCGCAAGGCT AAGCAGGGTT 
GGCACCATAG CTAGAACCTA CTCGTGTGCA AAAATAGTGA AAGTTGGGCT AAAAAATGCT 
GGCTTTTTGC TGAGCCTAAA AGAGGGCTAC GCTAGAAAAC GCCAGATGAG TAGCGCCGTG 
CTAGAGAAAA AGGATGAAAA TTTAAAGGAC GCTTGGTTTG CTAGATGCGA GCCTGTTGGC 
AGCGTAAATG GCAAAACAGC GCTTGTGATA GGAACAGGAG TGGCTGGGCT TGCCACCGCT 
GGAGAGCTAG CCAAAAATGG CTTTAAAGTG GTGATCGCCG AGGCAAAGAG CGAGGTCGCG 
ACAAATGGCT CAGGTAATCA CTGTGGTGCC TTGATGCCAC TAGTTACGAA GCCTGGGGTA 
AATTTAGGCC GCATGCATAT AAATGCGTTT TTACAGGCAG TGAGATTTTA CAAGGCAAAT 
TTACCAAAAA GTCTCATCAA ATTTAATGGC TGCATCGACT ATGCGTTTGA TGATGAGCTT 
GTCAAGCGAT ACTCCTCGTG GCAGGATCAA AGCGCGGAGG ATCTTTTTAA ATTTAATGAG 
AGTTTAAAGC CATATCCTGG GATATTTATA AAAGAGGCGG CTTATGCTAG ACCAAGAGAA 
ATTTGTAAAT TTCTATCAAG TAACTTTGAA ATTTTATTTA ACCACGAGTA CGAAAGTAGG 
GCGCACCTGC AAAATGGCAA GATAAGCGTT AAATTTAAAA ATAAAAAAAG CTTGGAGACT 
GATATCTTAG TCTTTTGCAC AGGTAGCAAA AGTAGCGAAA TTTTTAAAGA CTATGACATG 
CAAATAAGTA GCGTCCGTGG TCAAGTCACG CACCTAAAAC CAGTGCTAAA AAATGAGCTG 
CCACTAAGCG CAAAAGGCTA CATCTGCCCA GCCGTAAAAG GGGTGCAAGT CATCGGCGCA 
ACCTACGCTA GAAATGAAAT TTGTGACACG CCAAAAGATG AGGATAATGC TAAAAATTTA 
AGCGACGTGA GCGAGTTTTT TGACACCACA AAAGCCGCTA TCATCGGCTC ACGTGTGGGA 
TATAGAAGTT ATAGCGGAGA TAGATTTCCG ATAATCGGCG CTTTGCACGA CGAGGAGTTT 
TACAAGCAAA ACTACAAAGG GCTATTTTGG AGTAAAAATA AAGATAACAA TCCAAAAGCA 
AGCTACGAAA AAAATGTCTT TGTAAATTTT GCTCACGGCT CACGTGGCCT TGGCACGGCG 
ATACTTGGAG CAAATTTGAT AACCGATCTT GTGCTTGCTC GCCCACTTTG CATAGAAAGA 
TCGCTATTTT TTGAGCTTCA TCCTGCTAGA TTTTTGATAA GAAAGCTAAA AAAAGGACTA 
AAATAG 

 

Protein sequence

MKNANLSFKG QIPFNEEFDD IYFNTEKPWL ESEFVFTSAL DEIWQSKDSF IVAETGFGAG 
LNFFTLCKKF KNSSKKLHFV SIEKSPIKKE DLLKIYENLG IFKAYVKKLV SLYPPLISGI 
HRINFAPNIT LDLCYGEADQ ILPELDFAAD IWFLDGFAPS KNGSIWSEDV FKQIARLSRV 
GTIARTYSCA KIVKVGLKNA GFLLSLKEGY ARKRQMSSAV LEKKDENLKD AWFARCEPVG 
SVNGKTALVI GTGVAGLATA GELAKNGFKV VIAEAKSEVA TNGSGNHCGA LMPLVTKPGV 
NLGRMHINAF LQAVRFYKAN LPKSLIKFNG CIDYAFDDEL VKRYSSWQDQ SAEDLFKFNE 
SLKPYPGIFI KEAAYARPRE ICKFLSSNFE ILFNHEYESR AHLQNGKISV KFKNKKSLET 
DILVFCTGSK SSEIFKDYDM QISSVRGQVT HLKPVLKNEL PLSAKGYICP AVKGVQVIGA 
TYARNEICDT PKDEDNAKNL SDVSEFFDTT KAAIIGSRVG YRSYSGDRFP IIGALHDEEF 
YKQNYKGLFW SKNKDNNPKA SYEKNVFVNF AHGSRGLGTA ILGANLITDL VLARPLCIER 
SLFFELHPAR FLIRKLKKGL K