| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_0063 |
|---|
| Symbol | truB |
|---|
| ID | 5596125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter concisus 13826 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009802 |
|---|
| Strand | + |
|---|
| Start bp | 1218173 |
|---|
| End bp | 1218994 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640929776 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_001467058 |
|---|
| Protein GI | 157163902 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCA TTTTCGTGGC AAACAAGCCT GCTGGTATGA GCTCAAACCA CTTTTTAGGA
CGACTAAAGA GAAAATATGG CGTTAAAAAG GCTGGATTTT CAGGCACGCT TGATCCATTT
GCGAGTGGCT GTCTGATAGT CGCTTTTGGC TCATATACGA AATTTTTTAG ATTTTTAGAC
AAAAGCCCAA AGGTTTATGA GGCGACGATC TGGCTTGGGG CGAGCAGCCC AAGCATGGAT
AATGAAAATA TCACTGAAAT TTCAAATGTA AAAGAGCTAA ATTTAGAAAA ACTTGAAGCC
ATAAGAGGCG AGCTAATAGG CAAGATAAGC TATATCCCGC CAAAATTTAG CGCCAAACAT
GTAAATGGCA CAAGAGCTTA TAAGCTAGCA AGAAGCGGCG AAGAATTTGA GCTAAAGCCA
GAGATAATGG AAATTTATGA GAGTGAAATT TTGAATTATT CACACCCTTT TTTGACACTT
CGTTTAAGTG TAAGTGAGGG GAGTTACATC CGCTCTTATG CAGAAATTTT TGGGCAAAAA
GTTGGTTATA ATGTAACTTT AAGCTCATTA AAGAGGGTAA GTGAGGGTAA ATTTCGCTAT
GAAAATGAAA AATTTTTAAA TATTTGCAAT TTTTTAAATA TTGAACAAAA CACGTATTTT
GGGGATATTA ATAACATACT AGATGGCAAA GAATTAAAAA TTAACGATTT TGAAACACAA
ACACAAGGAA TTTATTTGCT AAATTATGAT AAATTTATGA GCGTAATCCA AATCATGGAT
GATACTATAA ATTACACTTT AAACAAGGTA GAAAAATGTT AA
|
|---|
| Protein sequence | MNAIFVANKP AGMSSNHFLG RLKRKYGVKK AGFSGTLDPF ASGCLIVAFG SYTKFFRFLD
KSPKVYEATI WLGASSPSMD NENITEISNV KELNLEKLEA IRGELIGKIS YIPPKFSAKH
VNGTRAYKLA RSGEEFELKP EIMEIYESEI LNYSHPFLTL RLSVSEGSYI RSYAEIFGQK
VGYNVTLSSL KRVSEGKFRY ENEKFLNICN FLNIEQNTYF GDINNILDGK ELKINDFETQ
TQGIYLLNYD KFMSVIQIMD DTINYTLNKV EKC
|
|---|
| |