| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3959 |
|---|
| Symbol | nikB |
|---|
| ID | 5586242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | + |
|---|
| Start bp | 3933053 |
|---|
| End bp | 3933997 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640927581 |
|---|
| Product | nickel transporter permease NikB |
|---|
| Protein accession | YP_001464942 |
|---|
| Protein GI | 157157383 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | [TIGR02789] nickel ABC transporter, permease subunit NikB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGTT ACGTATTACG CCGCTTTCTG CTGCTGATCC CGATGGTGCT CGCCGCCTCG
GTGATCATTT TTCTGATGCT GCGCCTCGGT ACCGGCGACC CGGCGCTCGA TTATTTGCGT
CTGTCTAACC TGCCGCCGAC GCCGGAGATG CTGGCCTCTA CCCGCACCAT GCTGGGACTG
GATCAGCCGC TGTACGTCCA GTACGGCACC TGGTTGTGGA AGGCGCTGCA TCTTGACTTT
GGTATCTCAT TCGCCAGCCA ACGCCCGGTA CTGGACGATA TGCTGAACTT CCTGCCCGCC
ACGCTGGAAC TTGCAGGTGC GGCGCTGGTA TTAATTCTGC TCACTTCCGT ACCGCTCGGT
ATCTGGGCGG CGCGCCACCG CGACCGTCTG CCGGATTTCG CCGTACGTTT CATCGCGTTT
CTTGGCGTGT CGATGCCTAA CTTCTGGCTG GCGTTTTTAC TGGTGATGGC GTTTTCGGTG
TATCTGCAAT GGCTACCCGC GATGGGTTAC GGCGGCTGGC AGCACATCAT TTTGCCTGCG
GTTTCCATTG CCTTTATGTC GCTGGCGATT AACGCGCGTT TACTGCGCGC CAGTATGCTG
GACGTCGCCG GTCAGCGTCA CGTCACCTGG GCGCGTCTGC GCGGCCTGAA CGACAAACAG
ACCGAACGTC GCCACATCCT GCGCAATGCC TCGCTGCCGA TGATCACCGC CGTGGGGATG
CACATCGGCG AACTGATCGG CGGGACGATG ATTATCGAAA ACATCTTTGC CTGGCCGGGC
GTCGGGCGCT ATGCGGTGTC GGCGATTTTT AACCGTGACT ATCCGGTGAT CCAGTGCTTT
ACGCTGATGA TGGTGGTGGT TTTTGTGGTC TGTAATTTGA TTGTCGATTT GCTCAACGCC
GCGCTGGACC CGCGCATTCG TCGTCATGAA GGAGCGCACG CGTGA
|
|---|
| Protein sequence | MLRYVLRRFL LLIPMVLAAS VIIFLMLRLG TGDPALDYLR LSNLPPTPEM LASTRTMLGL
DQPLYVQYGT WLWKALHLDF GISFASQRPV LDDMLNFLPA TLELAGAALV LILLTSVPLG
IWAARHRDRL PDFAVRFIAF LGVSMPNFWL AFLLVMAFSV YLQWLPAMGY GGWQHIILPA
VSIAFMSLAI NARLLRASML DVAGQRHVTW ARLRGLNDKQ TERRHILRNA SLPMITAVGM
HIGELIGGTM IIENIFAWPG VGRYAVSAIF NRDYPVIQCF TLMMVVVFVV CNLIVDLLNA
ALDPRIRRHE GAHA
|
|---|
| |