Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_3736 |
Symbol | |
ID | 5587363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | - |
Start bp | 3731196 |
End bp | 3733136 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640927359 |
Product | regulatory protein CsrD |
Protein accession | YP_001464726 |
Protein GI | 157159387 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000000469652 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGATTAA CGACGAAATT TTCGGCCTTT GTTACGCTGC TCACCGGGTT AACAATTTTT GTGACTTTGC TGGGCTGTTC GCTAAGTTTC TACAACGCAA TTCAGTATAA GTTTAGTCAT CGCGTTCAGG CGGTGGCGAC GGCGATTGAT ACCCACCTTG TGTCGAATGA CTTTAGCACA TTAAGGCCAC AAATTACCGA ATTAATGATG TCGGCAGATA TCGTTCGTGT AGACCTGCTC CATGGTGATA AACAGGTTTA TACCCTGGCC AGAAATGGTA GTTATCGTCC GGTTGGCTCC AGCGATCTGT TTCGCGAACT GAGTGTTCCG TTGATAAAGC ATCCGGGGAT GTCGCTGCGT CTGGTTTATC AGGATCCGAT GGGCAACTAT TTCCATTCTT TAATGACTAT CGCGCCGCTC ACGGGGGCGA TTGGCTTTAT CATTGTTATG CTCTTCCTGG CGGTACGCTG GTTACAACGG CAACTTGCCG GGCAAGAGTT GCTGGAAACC CGGGCTACTC GTATCTTAAA CGGTGAGCGT GGCTCTAATG TGTTGGGAAC CATCTATGAA TGGCCGCCCA GAACCAGCAG TGCGCTAGAT ACGCTGCTTC GTGAAATTCA GAACGCACGC GAACAACACA GCCGTCTTGA TACGCTGATC CGCTCTTATG CCGCCCAGGA CGTGAAAACC GGCCTCAATA ACCGACTCTT TTTCGATAAT CAGTTAGCAA CGTTACTGGA AGATCAGGAG AAAGTAGGTA CCCACGGGAT CGTGATGATG ATTCGTCTGC CGGATTTCAA TATGTTGAGC GATACTTGGG GGCACAGCCA GGTTGAAGAA CAGTTCTTCA CTCTGACGAA TCTGCTGTCG ACATTTATGA TGCGCTACCC TGGCGCACTG CTGGCGCGTT ACCACCGCAG TGATTTTGCT GCGCTGTTAC CGCACCGGAC GTTAAAAGAG GCAGAGAGCA TCGCCGGTCA GTTAATCAAA GCCGTCGATA CCTTGCCGAA CAATAAAATG CTCGATCGCG ACGATATGAT CCACATTGGT ATCTGCGCTT GGCGTAGTGG TCAGGATACC GAGCAGGTAA TGGAACATGC AGAGTCTGCC ACGCGTAATG CGGGATTGCA GGGCGGCAAT AGCTGGGCTA TTTACGATGA CTCGTTGCCT GAAAAAGGAC GCGGTAATGT TCGCTGGCGT ACGCTTATCG AGCAAATGCT CAGTCGCGGC GGCCCGCGCC TTTATCAAAA ACCGGCGGTT ACTCGCGAAG GTCAGGTTCA TCATCGCGAA CTCATGTGCC GCATCTTCGA TGGTAATGAA GAGGTTAGCT CGGCGGAGTA TATGCCGATG GTCTTGCAGT TTGGCTTATC GGAAGAGTAT GACCGTCTGC AAATCAGCCG TCTTATTCCA CTATTGCGTT ACTGGCCAGA GGAAAATCTG GCGATTCAGG TTACCGTTGA GTCGCTGATT CGCCCGCGTT TTCAGCGTTG GCTGCGCGAT ACGTTAATGC AATGTGAAAA ATCACAACGA AAACGCATAA TTATTGAACT TGCAGAGGCC GATGTAGGTC AACATATCAG TCGTTTACAA CCTGTTATTC GTTTAGTGAA TGCTTTAGGG GTACGGGTAG CCGTCAACCA GGCTGGTTTG ACGCTGGTAA GCACCAGTTG GATCAAAGAA CTTAATGTTG AGTTACTCAA GCTCCATCCG GGGCTGGTCA GGAACATTGA GAAGCGAACG GAGAACCAGC TGCTGGTTCA AAGCCTGGTG GAAGCCTGCT CCGGGACCAG CACCCACGTT TACGCCACCG GCGTGCGTTC GCGAAGCGAG TGGCAGACCC TGATTCAGCG CGGTGTTACA GGCGGGCAAG GGGATTTTTT CGCGTCCTCA CAGCCACTTG ATACTAACGT GAAAAAATAT TCACAAAGAT ACTCGGTTTA A
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Protein sequence | MRLTTKFSAF VTLLTGLTIF VTLLGCSLSF YNAIQYKFSH RVQAVATAID THLVSNDFST LRPQITELMM SADIVRVDLL HGDKQVYTLA RNGSYRPVGS SDLFRELSVP LIKHPGMSLR LVYQDPMGNY FHSLMTIAPL TGAIGFIIVM LFLAVRWLQR QLAGQELLET RATRILNGER GSNVLGTIYE WPPRTSSALD TLLREIQNAR EQHSRLDTLI RSYAAQDVKT GLNNRLFFDN QLATLLEDQE KVGTHGIVMM IRLPDFNMLS DTWGHSQVEE QFFTLTNLLS TFMMRYPGAL LARYHRSDFA ALLPHRTLKE AESIAGQLIK AVDTLPNNKM LDRDDMIHIG ICAWRSGQDT EQVMEHAESA TRNAGLQGGN SWAIYDDSLP EKGRGNVRWR TLIEQMLSRG GPRLYQKPAV TREGQVHHRE LMCRIFDGNE EVSSAEYMPM VLQFGLSEEY DRLQISRLIP LLRYWPEENL AIQVTVESLI RPRFQRWLRD TLMQCEKSQR KRIIIELAEA DVGQHISRLQ PVIRLVNALG VRVAVNQAGL TLVSTSWIKE LNVELLKLHP GLVRNIEKRT ENQLLVQSLV EACSGTSTHV YATGVRSRSE WQTLIQRGVT GGQGDFFASS QPLDTNVKKY SQRYSV
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