Gene EcE24377A_2698 details

Gene Information

• Locus tag: EcE24377A_2698
• Symbol: ligA
• ID: 5588540
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli E24377A
• Kingdom: Bacteria
• Replicon accession: NC_009801
• Strand: -
• Start bp: 2686168
• End bp: 2688183
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 640926354
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001463741
• Protein GI: 157156100
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000000000106098
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATCAA TCGAACAACA ACTGACAGAA CTGCGAACGA CGCTTCGCCA TCATGAATAT 
CTTTATCATG TGATGGATGC GCCGGAAATT CCCGACGCTG AATACGACAG GCTGATGCGC 
GAACTGCGCG AGCTGGAAAC CAAACATCCA GAACTGATTA CGCCTGATTC GCCTACCCAA 
CGTGTAGGCG CTGCGCCGCT GGCGGCTTTC AGCCAGATAC GCCATGAAGT ACCAATGCTG 
TCACTGGATA ACGTTTTTGA TGAAGAAAGC TTTCTTGCTT TCAACAAACG TGTGCAGGAC 
CGTCTGAAAA ACAACGAGAA AGTCACCTGG TGCTGTGAGC TGAAGCTGGA TGGCCTTGCC 
GTCAGTATTC TGTATGAAAA TGGCGTTTTA GTCAGTGCCG CGACCCGTGG CGATGGCACC 
ACCGGGGAAG ATATCACGTC TAATGTGCGT ACTATTCGCG CTATTCCGCT GAAGCTGCAC 
GGAGAGAATA TCCCGGCGCG TCTGGAAGTG CGTGGTGAAG TGTTCCTGCC GCAGGCGGGG 
TTCGAAAAGA TTAACGAAGA TGCGCGACGC ACGGGCGGGA AAGTTTTTGC TAACCCACGT 
AATGCGGCAG CTGGTTCACT GCGTCAGCTT GATCCGCGTA TTACAGCGAA GCGACCGCTC 
ACTTTTTTCT GCTATGGCGT TGGTGTTCTG GAAGGTGGCG AGCTGCCGGA TACTCATCTT 
GGCCGTTTAC TGCAATTTAA AAAGTGGGGG TTGCCGGTCA GCGATCGGGT AACGCTTTGT 
GAATCGGCGG AAGAAGTGCT GGCGTTCTAT CACAAAGTGG AAGAAGACCG CCCGACGCTG 
GGCTTTGATA TCGACGGCGT GGTGATTAAG GTCAACTCAC TGGAACAGCA GGAGCAGCTT 
GGCTTTGTCG CGCGTGCCCC GCGCTGGGCG GTAGCGTTTA AATTCCCGGC GCAGGAGCAG 
ATGACCTTTG TGCGTGACGT CGAGTTTCAG GTTGGGCGTA CTGGCGCGAT TACGCCTGTT 
GCGCGTCTGG AACCTGTCCA TGTTGCTGGC GTGCTGGTGA GTAACGCAAC CTTACACAAT 
GCGGATGAAA TCGAACGTCT TGGTTTACGC ATTGGCGATA AAGTGGTGAT TCGCCGCGCT 
GGCGACGTGA TCCCGCAGGT GGTTAACGTC GTGCTTTCTG AACGCCCGGA AGATACCCGT 
GAGGTTGTAT TCCCGACGCA TTGTCCGGTA TGTGGTTCTG ACGTTGAGCG TGTGGAAGGT 
GAAGCGGTTG CCCGCTGTAC CGGTGGCCTG ATTTGCGGAG CGCAGCGTAA AGAGTCGCTG 
AAACACTTTG TTTCCCGCCG TGCGATGGAT GTTGACGGAA TGGGCGACAA AATCATCGAT 
CAGCTGGTTG AAAAAGAATA TGTCCATACT CCGGCAGATC TGTTCAAACT CACCGCAGGC 
AAACTGACCG GACTGGAGCG TATGGGGCCA AAATCGGCAC AAAACGTGGT TAACGCGCTA 
GAAAAAGCGA AAGAAACCAC CTTTGCTCGC TTCCTCTATG CACTTGGCAT CCGTGAAGTC 
GGCGAGGCCA CCGCAGCAGG TCTGGCGGCA TATTTCGGCA CGCTGGAAGC GCTGGAAGCC 
GCTTCGATTG AAGAGCTGCA AAAGGTGCCT GATGTTGGCA TTGTCGTTGC ATCCCACGTT 
CACAACTTCT TTGCCGAAGA AAGCAACCGC AATGTCATCA GCGAGCTGTT GGCGGAAGGT 
GTTCACTGGC CTGCGCCGAT CGTTATCAAC GCGGAAGAGA TTGACAGCCC GTTTGCTGGT 
AAAACCGTGG TGCTTACGGG CAGCTTAAGC CAGATGTCGC GTGATGACGC TAAAGCTCGA 
CTGGTTGAAC TGGGCGCGAA AGTCGCGGGC AGCGTGTCGA AGAAAACCGA TCTGGTGATT 
GCCGGAGAAG CGGCAGGTTC TAAACTGGCG AAAGCGCAGG AACTGGGCAT TGAAGTCATC 
GACGAAGCGG AAATGCTGCG TTTGCTGGGT AGCTGA 

 

Protein sequence

MESIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELETKHP ELITPDSPTQ 
RVGAAPLAAF SQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKNNEKVTW CCELKLDGLA 
VSILYENGVL VSAATRGDGT TGEDITSNVR TIRAIPLKLH GENIPARLEV RGEVFLPQAG 
FEKINEDARR TGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGVL EGGELPDTHL 
GRLLQFKKWG LPVSDRVTLC ESAEEVLAFY HKVEEDRPTL GFDIDGVVIK VNSLEQQEQL 
GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVHVAG VLVSNATLHN 
ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEDTR EVVFPTHCPV CGSDVERVEG 
EAVARCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEKEYVHT PADLFKLTAG 
KLTGLERMGP KSAQNVVNAL EKAKETTFAR FLYALGIREV GEATAAGLAA YFGTLEALEA 
ASIEELQKVP DVGIVVASHV HNFFAEESNR NVISELLAEG VHWPAPIVIN AEEIDSPFAG 
KTVVLTGSLS QMSRDDAKAR LVELGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGIEVI 
DEAEMLRLLG S