Gene EcE24377A_2171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcE24377A_2171 
SymbolfliF 
ID5590716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli E24377A 
KingdomBacteria 
Replicon accessionNC_009801 
Strand
Start bp2142812 
End bp2144470 
Gene Length1659 bp 
Protein Length552 aa 
Translation table11 
GC content55% 
IMG OID640925840 
Productflagellar MS-ring protein 
Protein accessionYP_001463240 
Protein GI157158866 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein 
TIGRFAM ID[TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.510542 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGCGA CTGCAGCCCA GACAAAATCT CTTGAGTGGC TTAATCGCCT GCGTGCGAAT 
CCGAAAATTC CATTGATTGT TGCCGGTTCC GCGGCAGTGG CGGTCATGGT CGCACTGATC
CTGTGGGCGA AAGCCCCCGA CTACCGCACA TTATTCAGCA ATCTTTCCGA TCAGGATGGT
GGCGCAATTG TCAGCCAACT GACGCAAATG AATATTCCTT ACCGCTTCAG CGAAGCCAGC
GGCGCTATTG AAGTTCCGGC AGATAAAGTT CACGAACTGC GTCTGCGCTT GGCACAACAA
GGTTTGCCCA AAGGCGGCGC GGTCGGTTTC GAACTACTCG ATCAGGAAAA GTTTGGTATC
AGCCAGTTCA GCGAACAGGT GAATTATCAG CGGGCGCTGG AAGGCGAGCT TTCTCGTACC
ATCGCAACTA TCGGCCCGGT AAAAGGGGCG CGCGTACATC TGGCAATGCC GAAACCGTCT
TTATTCGTCC GTGAACAAAA ATCCCCTTCT GCATCGGTGA CGATAAATCT GTTACCCGGC
CGCGCACTCG ATGAAGGGCA AATTAGCGCC ATTGTGCATC TGGTTTCCAG CGCCGTTGCT
GGTCTGCCGC CGGGAAACGT CACGCTGGTG GATCAGGGCG GACATCTGTT AACCCAGTCC
AATACCAGCG GGCGCGATCT TAATGATGCT CAGTTGAAAT ATGCCAGCGA TGTCGAAGGC
CGTATTCAGC GGCGTATTGA AGCAATCCTG TCGCCTATTG TTGGTAACGG TAATATTCAC
GCCCAGGTCA CGGCGCAGCT GGACTTCGCC AGTAAAGAAC AAACGGAAGA ACAGTATCGC
CCTAACGGTG ATGAATCTCA TGCGGCGCTT CGTTCACGCC AGCTTAATGA GAGCGAGCAA
AGCGGTTCCG GTTATCCGGG CGGCGTACCG GGGGCGTTGT CGAATCAACC GGCACCTGCG
AATAACGCGC CAATCAGCAC GCCTCCGGCA AATCAAAATA ACCGCCAGCA GCAGGCGAGC
ACCACCAGCA ATAGCGGGCC GCGTAGCACA CAGCGGAATG AAACCAGTAA CTACGAAGTC
GATCGCACCA TTCGTCATAC CAAAATGAAC GTGGGCGATG TGCAACGTCT GTCAGTCGCG
GTAGTGGTGA ATTACAAAAC CTTGCCAGAC GGTAAACCAT TGCCTCTCAG CAACGAACAG
ATGAAGCAAA TTGAAGATCT GACCCGCGAG GCGATGGGCT TTTCTGAAAA ACGCGGTGAC
TCGCTCAATG TCGTTAACTC GCCGTTCAAT AGCAGTGACG AAAGCGGCGG AGAACTGCCG
TTCTGGCAAC AGCAAGCGTT TATCGATCAG TTGCTGGCTG CCGGTCGCTG GTTGCTGGTA
CTGCTGGTGG CGTGGCTGCT GTGGCGGAAA GCGGTACGCC CGCAGTTAAC ACGTCGCGCC
GAGGCGATGA AAGCTGTACA GCAACAGGCG CAGGCCCGTG AGGAAGTGGA AGATGCGGTG
GAAGTCCGCC TGAGCAAAGA CGAACAACTC CAACAACGAC GCGCTAACCA ACGTCTGGGG
GCAGAAGTCA TGAGCCAGCG TATCCGTGAA ATGTCTGATA ACGATCCGCG CGTGGTGGCG
CTGGTCATTC GCCAGTGGAT AAATAACGAT CATGAGTAA
 
Protein sequence
MNATAAQTKS LEWLNRLRAN PKIPLIVAGS AAVAVMVALI LWAKAPDYRT LFSNLSDQDG 
GAIVSQLTQM NIPYRFSEAS GAIEVPADKV HELRLRLAQQ GLPKGGAVGF ELLDQEKFGI
SQFSEQVNYQ RALEGELSRT IATIGPVKGA RVHLAMPKPS LFVREQKSPS ASVTINLLPG
RALDEGQISA IVHLVSSAVA GLPPGNVTLV DQGGHLLTQS NTSGRDLNDA QLKYASDVEG
RIQRRIEAIL SPIVGNGNIH AQVTAQLDFA SKEQTEEQYR PNGDESHAAL RSRQLNESEQ
SGSGYPGGVP GALSNQPAPA NNAPISTPPA NQNNRQQQAS TTSNSGPRST QRNETSNYEV
DRTIRHTKMN VGDVQRLSVA VVVNYKTLPD GKPLPLSNEQ MKQIEDLTRE AMGFSEKRGD
SLNVVNSPFN SSDESGGELP FWQQQAFIDQ LLAAGRWLLV LLVAWLLWRK AVRPQLTRRA
EAMKAVQQQA QAREEVEDAV EVRLSKDEQL QQRRANQRLG AEVMSQRIRE MSDNDPRVVA
LVIRQWINND HE