Gene EcE24377A_1638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcE24377A_1638 
Symbol 
ID5587871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli E24377A 
KingdomBacteria 
Replicon accessionNC_009801 
Strand
Start bp1627947 
End bp1630055 
Gene Length2109 bp 
Protein Length702 aa 
Translation table11 
GC content56% 
IMG OID640925325 
Producttype VI secretion system Vgr family protein 
Protein accessionYP_001462730 
Protein GI157158133 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.674786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACCG GATTACGTTT CACACTGGAA GTGGACGGCC TGCCGCCGGA TGCTTTTGCG 
GTGGTTTCCT TTCATCTGAA CCAGTCACTC TCTTCGCTCT TTTCCCTCGA TCTCTCCCTG
GTCAGCCAGC AGTTTCTCTC CCTTGAATTT GCGCAGGTGC TGGACAAAAT GGCCTACCTG
ACGATATGGC AGGGCGATGA AGTACAGCGC CGGGTGAAAG GCGTGGTGAC CTGGTTTGAA
CTCGGGGAGA ACGACAAAAA CCAGATGCTG TACAGCATGA AGGTGCACCC GCCGCTGTGG
CGTGCCGGTC TGCGCCAGAA CTTCCGTATC TTCCAGAACG AGGACATCAA AAGCATCCTC
GGCACGATGT TGCAGGAAAA CGGGGTGACC GAATGGAGTC CGCTGTTCAG CGAGCCGCAT
CCTTCCCGTG AGTTTTGTGT CCAGTACGGT GAGACTGATT ACGATTTCCT GTGCCGGATG
GCGGCGGAGG AAGGCATCTT CTTTTATGAG GATCATGCTT ACAAAAGTAC CGACCAGAGC
CTGGTGCTGT GCGACACAGT CCGCCATCTG CCCGAATCTT TTGAAATCCC ATGGAACCCG
AACACCCGTA CCGAGGTGAG CACCCTCTGC ATCAGCCAGT TCCGCTACAG CGCACAAATC
CGCCCTTCTT CCGTGGTGAC CAAAGACTAC ACCTTTAAAC GCCCCGGCTG GGCCGGACGT
TTTGATCAGG AAGGCCAGCA CCAGGATTAC CAGCGCACAC AGTATGAAGT GTATGACTAC
CCCGGACGTT TCAAGGGGGC CCACGGGCAG AACTTTGCCC GCTGGCAGAT GGACGGCTGG
CGAAACAATG CAGAAACCGC GCGGGGAATG AGTCGCTCGC CGGAGATATG GCCGGGACGA
CGAATTGTGC TGACGGGGCA TCCGCAGGCG AACCTGAACC GGGAATGGCA GGTGGTGGCA
AGTGAACTGC ACGGCGAACA GCCACAGGCG GTGCCAGGAC GGCAGGGAGC GGGGACGGCG
CTGGAGAACC ATTTTGCGGT GATCCCGGCA GACAGAACAT GGCGACCACA GCCGTTGCTG
AAACCGCTGG TCGACGGCCC GCAGAGCGCT GTCGTGACAG GACCGGCAGG CGAGGAAATC
TTCTGCGACG AACATGGTCG CGTGCGGGTG AAGTTCAACT GGGACCGTTA TAACCCGGCA
GACCAAGACA GTTCGTGCTG GATCCGTGTG GCACAGGCGT GGGCAGGCAC CGGTTTTGGC
CACCTGGCGA TACCGCGTGT GGGTCAGGAG GTGATTGTGG ACTTCCTCAA CGGCGACCCG
GACCAGCCGA TTATTATGGG GCGTACCTAC CACCATGAAA ACCGCACACC CGGCAGCCTG
CCGGGGACGA AGACGCAGAT GACGATCCGC TCGAAAACCT ATAAGGGCAG CGGGTTTAAT
GAACTGAAGT TTGACGATGC GACAGGGAAA GAACAGGTCT ACATCCACGC GCAGAAGAAC
ATGAACACCG AGGTGCTGAA TAACCGCACC ACGGATGTGA TAAACAACCA TGCTGAGACC
ATTGGCAACA ATCAGATGAT TGCGGTTACC AACAATCAGA TACAGACGGT GGGCGTTAAC
CAGATAGAGA CGGTGGGCAG TAACCAGATC ATTAACGTGG GTTCTGTTCA GGTGGAAACG
ATTGGACTTG TTCGTGCGCT GACCGTGGGC GTGGCGTACC AGACGACGGT AGGTGGCATT
ATGAACACTT CGGTGGCTCT GATGCAGTCC TCGCAGATCG GTTTACATAA ATCGTTGAGG
GTCGGGCTGG GTTATGACGT CAAAGTCGGA AATAACGTTA CCTTCACCGT TGGTAAAACG
AAAAAGGATG ATACCGGGCA GACCGCGATT TACTCCGCCG GTGAGCATCT GGAGCTCTGC
TGTGGTAAGG CAAGGCTGGT GCTGACGAAG GACGGACAAA TTTTTCTCAA CGGCACAAAA
ATTCATTTGC AGGGTAAGGA GCAGGTTAAT GGTGACTCAC TGTTGATTAA CTGGAACTGT
GCAGCCTCGA AATCCCCACC GAAGACCCCT GATGAAAAGC AGGATACGCC GGATATGAGA
GAGTACTGA
 
Protein sequence
MSTGLRFTLE VDGLPPDAFA VVSFHLNQSL SSLFSLDLSL VSQQFLSLEF AQVLDKMAYL 
TIWQGDEVQR RVKGVVTWFE LGENDKNQML YSMKVHPPLW RAGLRQNFRI FQNEDIKSIL
GTMLQENGVT EWSPLFSEPH PSREFCVQYG ETDYDFLCRM AAEEGIFFYE DHAYKSTDQS
LVLCDTVRHL PESFEIPWNP NTRTEVSTLC ISQFRYSAQI RPSSVVTKDY TFKRPGWAGR
FDQEGQHQDY QRTQYEVYDY PGRFKGAHGQ NFARWQMDGW RNNAETARGM SRSPEIWPGR
RIVLTGHPQA NLNREWQVVA SELHGEQPQA VPGRQGAGTA LENHFAVIPA DRTWRPQPLL
KPLVDGPQSA VVTGPAGEEI FCDEHGRVRV KFNWDRYNPA DQDSSCWIRV AQAWAGTGFG
HLAIPRVGQE VIVDFLNGDP DQPIIMGRTY HHENRTPGSL PGTKTQMTIR SKTYKGSGFN
ELKFDDATGK EQVYIHAQKN MNTEVLNNRT TDVINNHAET IGNNQMIAVT NNQIQTVGVN
QIETVGSNQI INVGSVQVET IGLVRALTVG VAYQTTVGGI MNTSVALMQS SQIGLHKSLR
VGLGYDVKVG NNVTFTVGKT KKDDTGQTAI YSAGEHLELC CGKARLVLTK DGQIFLNGTK
IHLQGKEQVN GDSLLINWNC AASKSPPKTP DEKQDTPDMR EY