Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_1638 |
Symbol | |
ID | 5587871 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | + |
Start bp | 1627947 |
End bp | 1630055 |
Gene Length | 2109 bp |
Protein Length | 702 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640925325 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001462730 |
Protein GI | 157158133 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.674786 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAACCG GATTACGTTT CACACTGGAA GTGGACGGCC TGCCGCCGGA TGCTTTTGCG GTGGTTTCCT TTCATCTGAA CCAGTCACTC TCTTCGCTCT TTTCCCTCGA TCTCTCCCTG GTCAGCCAGC AGTTTCTCTC CCTTGAATTT GCGCAGGTGC TGGACAAAAT GGCCTACCTG ACGATATGGC AGGGCGATGA AGTACAGCGC CGGGTGAAAG GCGTGGTGAC CTGGTTTGAA CTCGGGGAGA ACGACAAAAA CCAGATGCTG TACAGCATGA AGGTGCACCC GCCGCTGTGG CGTGCCGGTC TGCGCCAGAA CTTCCGTATC TTCCAGAACG AGGACATCAA AAGCATCCTC GGCACGATGT TGCAGGAAAA CGGGGTGACC GAATGGAGTC CGCTGTTCAG CGAGCCGCAT CCTTCCCGTG AGTTTTGTGT CCAGTACGGT GAGACTGATT ACGATTTCCT GTGCCGGATG GCGGCGGAGG AAGGCATCTT CTTTTATGAG GATCATGCTT ACAAAAGTAC CGACCAGAGC CTGGTGCTGT GCGACACAGT CCGCCATCTG CCCGAATCTT TTGAAATCCC ATGGAACCCG AACACCCGTA CCGAGGTGAG CACCCTCTGC ATCAGCCAGT TCCGCTACAG CGCACAAATC CGCCCTTCTT CCGTGGTGAC CAAAGACTAC ACCTTTAAAC GCCCCGGCTG GGCCGGACGT TTTGATCAGG AAGGCCAGCA CCAGGATTAC CAGCGCACAC AGTATGAAGT GTATGACTAC CCCGGACGTT TCAAGGGGGC CCACGGGCAG AACTTTGCCC GCTGGCAGAT GGACGGCTGG CGAAACAATG CAGAAACCGC GCGGGGAATG AGTCGCTCGC CGGAGATATG GCCGGGACGA CGAATTGTGC TGACGGGGCA TCCGCAGGCG AACCTGAACC GGGAATGGCA GGTGGTGGCA AGTGAACTGC ACGGCGAACA GCCACAGGCG GTGCCAGGAC GGCAGGGAGC GGGGACGGCG CTGGAGAACC ATTTTGCGGT GATCCCGGCA GACAGAACAT GGCGACCACA GCCGTTGCTG AAACCGCTGG TCGACGGCCC GCAGAGCGCT GTCGTGACAG GACCGGCAGG CGAGGAAATC TTCTGCGACG AACATGGTCG CGTGCGGGTG AAGTTCAACT GGGACCGTTA TAACCCGGCA GACCAAGACA GTTCGTGCTG GATCCGTGTG GCACAGGCGT GGGCAGGCAC CGGTTTTGGC CACCTGGCGA TACCGCGTGT GGGTCAGGAG GTGATTGTGG ACTTCCTCAA CGGCGACCCG GACCAGCCGA TTATTATGGG GCGTACCTAC CACCATGAAA ACCGCACACC CGGCAGCCTG CCGGGGACGA AGACGCAGAT GACGATCCGC TCGAAAACCT ATAAGGGCAG CGGGTTTAAT GAACTGAAGT TTGACGATGC GACAGGGAAA GAACAGGTCT ACATCCACGC GCAGAAGAAC ATGAACACCG AGGTGCTGAA TAACCGCACC ACGGATGTGA TAAACAACCA TGCTGAGACC ATTGGCAACA ATCAGATGAT TGCGGTTACC AACAATCAGA TACAGACGGT GGGCGTTAAC CAGATAGAGA CGGTGGGCAG TAACCAGATC ATTAACGTGG GTTCTGTTCA GGTGGAAACG ATTGGACTTG TTCGTGCGCT GACCGTGGGC GTGGCGTACC AGACGACGGT AGGTGGCATT ATGAACACTT CGGTGGCTCT GATGCAGTCC TCGCAGATCG GTTTACATAA ATCGTTGAGG GTCGGGCTGG GTTATGACGT CAAAGTCGGA AATAACGTTA CCTTCACCGT TGGTAAAACG AAAAAGGATG ATACCGGGCA GACCGCGATT TACTCCGCCG GTGAGCATCT GGAGCTCTGC TGTGGTAAGG CAAGGCTGGT GCTGACGAAG GACGGACAAA TTTTTCTCAA CGGCACAAAA ATTCATTTGC AGGGTAAGGA GCAGGTTAAT GGTGACTCAC TGTTGATTAA CTGGAACTGT GCAGCCTCGA AATCCCCACC GAAGACCCCT GATGAAAAGC AGGATACGCC GGATATGAGA GAGTACTGA
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Protein sequence | MSTGLRFTLE VDGLPPDAFA VVSFHLNQSL SSLFSLDLSL VSQQFLSLEF AQVLDKMAYL TIWQGDEVQR RVKGVVTWFE LGENDKNQML YSMKVHPPLW RAGLRQNFRI FQNEDIKSIL GTMLQENGVT EWSPLFSEPH PSREFCVQYG ETDYDFLCRM AAEEGIFFYE DHAYKSTDQS LVLCDTVRHL PESFEIPWNP NTRTEVSTLC ISQFRYSAQI RPSSVVTKDY TFKRPGWAGR FDQEGQHQDY QRTQYEVYDY PGRFKGAHGQ NFARWQMDGW RNNAETARGM SRSPEIWPGR RIVLTGHPQA NLNREWQVVA SELHGEQPQA VPGRQGAGTA LENHFAVIPA DRTWRPQPLL KPLVDGPQSA VVTGPAGEEI FCDEHGRVRV KFNWDRYNPA DQDSSCWIRV AQAWAGTGFG HLAIPRVGQE VIVDFLNGDP DQPIIMGRTY HHENRTPGSL PGTKTQMTIR SKTYKGSGFN ELKFDDATGK EQVYIHAQKN MNTEVLNNRT TDVINNHAET IGNNQMIAVT NNQIQTVGVN QIETVGSNQI INVGSVQVET IGLVRALTVG VAYQTTVGGI MNTSVALMQS SQIGLHKSLR VGLGYDVKVG NNVTFTVGKT KKDDTGQTAI YSAGEHLELC CGKARLVLTK DGQIFLNGTK IHLQGKEQVN GDSLLINWNC AASKSPPKTP DEKQDTPDMR EY
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