Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_1236 |
Symbol | mfd |
ID | 5590455 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | - |
Start bp | 1247975 |
End bp | 1251421 |
Gene Length | 3447 bp |
Protein Length | 1148 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640924935 |
Product | transcription-repair coupling factor |
Protein accession | YP_001462347 |
Protein GI | 157158427 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00316475 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCTGAAC AATATCGTTA TACGCTGCCC GTCAAAGCGG GTGAGCAGCG TCTGCTGGGC GAGTTAACCG GCGCAGCCTG TGCAACGCTG GTAGCGGAAA TTGCCGAACG TCACGCCGGT CCGGTGGTAC TCATTGCACC AGATATGCAA AATGCTCTGC GTTTGCATGA TGAAATCAGC CAGTTCACCG ATCAGATGGT GATGAATCTG GCGGACTGGG AAACTCTTCC CTACGACAGT TTTTCGCCTC ATCAGGACAT TATCTCCTCG CGCCTTTCCA CCCTTTACCA GCTACCGACG ATGCAGCGTG GCGTACTGAT TGTTCCGGTG AATACGCTTA TGCAGCGCGT TTGCCCACAC AGTTTTCTCC ACGGTCATGC GCTGGTGATG AAAAAAGGTC AGCGCCTGTC ACGAGATGCA TTACGAACCC AACTGGACAG CGCCGGTTAT CGCCATGTTG ACCAGGTGAT GGAGCACGGC GAATACGCCA CGCGCGGCGC GTTGCTGGAT CTCTTCCCGA TGGGGAGTGA GCTGCCTTAT CGTCTTGATT TCTTTGATGA TGAAATCGAC AGCCTGCGGG TGTTTGACGT CGACAGCCAG CGCACGCTGG AGGAAGTAGA AGCGATCAAT CTGCTGCCCG CGCACGAATT TCCGACCGAT AAAGCGGCAA TTGAACTGTT CCGCAGCCAG TGGCGCGATA CCTTCGAAGT GAAGCGCGAT CCGGAACATA TTTACCAGCA AGTGAGTAAA GGCACATTAC CTGCCGGGAT CGAGTACTGG CAGCCATTGT TCTTCAGCGA ACCACTGCCG CCGCTGTTCA GTTATTTCCC TGCCAATACC TTGCTCGTGA ATACTGGCGA TCTGGAAACC AGTGCCGAAC GTTTCCAGGC TGACACGCTG GCGCGTTTTG AGAATCGCGG CGTCGATCCG ATGCGCCCGC TGTTGCCACC ACAATCGCTC TGGCTGCGGG TGGACGAGCT CTTCTCAGAG CTGAAAAACT GGCCCCGGGT GCAGCTAAAA ACTGAACATT TACCGACAAA AGCCGCGAAT GCCAATTTAG GTTTCCAGAA ACTGCCAGAC CTGGCCGTTC AGGCACAACA AAAAGCGCCG CTGGATGCGC TGCGTAAGTT CCTCGAGACT TTCGACGGTC CGGTGGTGTT CTCGGTAGAA AGTGAAGGTC GCCGTGAAGC GCTGGGTGAA CTGCTCGCAC GAATTAAAAT TGCTCCGCAA CGCATTATGC GTCTTGATGA AGCCAGCGAC CGTGGGCGTT ATCTGATGAT TGGCGCTGCC GAACATGGTT TTGTCGATAA GGTGCGTAAT CTGGCGCTGA TCTGCGAAAG CGATCTGCTC GGTGAACGTG TTGCCCGCCG TCGTCAGGAT TCTCGCCGCA CCATCAACCC CGATACACTG ATCCGTAACC TTGCGGAGCT GCATATTGGT CAGCCGGTGG TCCATCTGGA GCACGGTGTC GGGCGCTATG CCGGAATGAC CACGCTCGAA GCGGGCGGCA TTACTGGCGA GTATTTGATG CTCACCTATG CCAACGACGC CAAACTGTAT GTTCCGGTGT CGTCACTGCA TCTGATTAGC CGTTACGCAG GTGGCGCGGA AGAAAACGCC CCGCTGCATA AACTTGGCGG CGATGCGTGG TCACGCGCGC GGCAGAAAGC GGCGGAAAAA GTGCGTGATG TGGCGGCGGA ATTGCTGGAT ATCTACGCGC AACGCGCCGC CAAAGAGGGC TTCGCGTTTA AACACGATCG TGAGCAGTAT CAGTTGTTCT GCGACAGCTT CCCGTTTGAA ACCACGCCGG ATCAGGCGCA GGCCATTAAT GCGGTACTTA GCGACATGTG TCAGCCGCTG GCAATGGATC GTCTGGTGTG CGGCGATGTT GGCTTTGGTA AAACAGAAGT GGCGATGCGC GCCGCTTTCC TGGCAGTAGA TAACCACAAG CAGGTGGCGG TGTTGGTGCC TACCACCCTT CTCGCGCAGC AGCATTACGA CAACTTCCGC GACCGTTTCG CCAACTGGCC GGTACGTATC GAAATGATCT CCCGTTTCCG CAGCGCCAAA GAGCAGACGC AAATCCTTGC GGAAGTGGCG GAAGGGAAAA TCGATATTCT GATCGGTACG CACAAACTGC TGCAAAGTGA CGTCAAGTTT AAAGATTTAG GCCTGCTGAT TGTCGATGAA GAACACCGCT TCGGGGTGCG TCATAAAGAG CGTATTAAAG CGATGCGCGC GAACGTGGAT ATTCTGACGC TTACTGCAAC GCCGATCCCA CGTACGCTGA ATATGGCAAT GAGCGGAATG CGTGACCTGT CGATTATCGC CACGCCGCCC GCCCGTCGTC TGGCAGTTAA AACCTTTGTC CGTGAGTATG ACAGCCTGGT GGTCCGGGAG GCGATCCTGC GTGAAATTTT GCGCGGAGGA CAGGTTTATT ATCTCTACAA TGATGTGGAA AACATTCAGA AAGCCGCCGA ACGGCTGGCA GAACTGGTGC CAGAAGCGCG GATCGCCATC GGTCACGGGC AGATGCGCGA GCGCGAACTG GAACGGGTGA TGAATGATTT CCATCATCAA CGTTTCAACG TGCTGGTTTG TACAACCATT ATCGAAACCG GGATCGACAT CCCGACAGCC AACACCATTA TCATTGAACG CGCGGATCAC TTCGGTCTGG CGCAGCTGCA CCAGTTACGC GGTCGCGTCG GACGTTCACA TCATCAGGCA TATGCATGGC TGCTGACGCC GCATCCAAAA GCGATGACTA CCGATGCACA AAAACGTCTT GAAGCGATTG CCTCGCTGGA AGATCTCGGT GCAGGCTTTG CGCTGGCAAC GCACGATCTG GAGATTCGCG GCGCGGGTGA ACTGCTTGGC GAAGAACAAA GCGGCTCAAT GGAAACCATC GGTTTCTCGC TGTATATGGA GTTGCTGGAA AACGCCGTCG ATGCACTGAA AGCCGGACGC GAGCCGTCGC TGGAAGATCT CACCAGCCAG CAAACAGAAG TCGAGCTGCG GATGCCGTCG CTATTGCCAG ATGATTTCAT TCCTGACGTG AATACGCGTT TGTCGTTCTA TAAACGTATT GCCAGCGCCA AAACGGAAAA CGAACTGGAA GAGATCAAAG TCGAGCTTAT CGATCGCTTC GGCCTGCTGC CGGATCCGGC GCGTATCCTG CTGGATGTTG CCCGTCTGCG CCAGCAAGCG CAGAAACTGG GGATCAGGAA GCTGGAAGGT AATGAGAAAG GCGGGGTGAT CGAATTTGCC GAGAAGAATC ACGTTAATCC GGCCTGGTTG ATTGGTTTGC TGCAAAAACA GCCGCAGCAT TACCGCCTTG ATGGTCCGAC GCGCCTGAAA TTTATTCAGG ATTTGAGTGA GCGGAAAACG CGTATCGAAT GGGTACGCCA GTTTATGCGT GAACTGGAAG AGAACGCGAT CGCTTAA
|
Protein sequence | MPEQYRYTLP VKAGEQRLLG ELTGAACATL VAEIAERHAG PVVLIAPDMQ NALRLHDEIS QFTDQMVMNL ADWETLPYDS FSPHQDIISS RLSTLYQLPT MQRGVLIVPV NTLMQRVCPH SFLHGHALVM KKGQRLSRDA LRTQLDSAGY RHVDQVMEHG EYATRGALLD LFPMGSELPY RLDFFDDEID SLRVFDVDSQ RTLEEVEAIN LLPAHEFPTD KAAIELFRSQ WRDTFEVKRD PEHIYQQVSK GTLPAGIEYW QPLFFSEPLP PLFSYFPANT LLVNTGDLET SAERFQADTL ARFENRGVDP MRPLLPPQSL WLRVDELFSE LKNWPRVQLK TEHLPTKAAN ANLGFQKLPD LAVQAQQKAP LDALRKFLET FDGPVVFSVE SEGRREALGE LLARIKIAPQ RIMRLDEASD RGRYLMIGAA EHGFVDKVRN LALICESDLL GERVARRRQD SRRTINPDTL IRNLAELHIG QPVVHLEHGV GRYAGMTTLE AGGITGEYLM LTYANDAKLY VPVSSLHLIS RYAGGAEENA PLHKLGGDAW SRARQKAAEK VRDVAAELLD IYAQRAAKEG FAFKHDREQY QLFCDSFPFE TTPDQAQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVDNHK QVAVLVPTTL LAQQHYDNFR DRFANWPVRI EMISRFRSAK EQTQILAEVA EGKIDILIGT HKLLQSDVKF KDLGLLIVDE EHRFGVRHKE RIKAMRANVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP ARRLAVKTFV REYDSLVVRE AILREILRGG QVYYLYNDVE NIQKAAERLA ELVPEARIAI GHGQMREREL ERVMNDFHHQ RFNVLVCTTI IETGIDIPTA NTIIIERADH FGLAQLHQLR GRVGRSHHQA YAWLLTPHPK AMTTDAQKRL EAIASLEDLG AGFALATHDL EIRGAGELLG EEQSGSMETI GFSLYMELLE NAVDALKAGR EPSLEDLTSQ QTEVELRMPS LLPDDFIPDV NTRLSFYKRI ASAKTENELE EIKVELIDRF GLLPDPARIL LDVARLRQQA QKLGIRKLEG NEKGGVIEFA EKNHVNPAWL IGLLQKQPQH YRLDGPTRLK FIQDLSERKT RIEWVRQFMR ELEENAIA
|
| |