Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_1055 |
Symbol | fimD2 |
ID | 5589171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | + |
Start bp | 1077866 |
End bp | 1080466 |
Gene Length | 2601 bp |
Protein Length | 866 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640924759 |
Product | outer membrane usher protein fimD |
Protein accession | YP_001462173 |
Protein GI | 157156978 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00207223 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATAGAA CTCATCGACA ACACAGCCTG TTAAGCTCTG GTGGAGTGCC ATCGTTTATT GGTGGGCTGG TGGTGTTTGT GTCGGCAGCG TTCAATGCAC AAGCTGAAAC CTGGTTCGAT CCTGCTTTTT TCAAAGATGA TCCCTCAATG GTGGCCGATT TGTCTCGTTT CGAAAAAGGA CAAAAAATAA CGCCAGGGGT TTATCGTGTC GATATTGTTC TGAATCAGAC AATTGTAAAT ACGCGCAACG TCAATTTTGT TGAGATAACG CCAGAGAAGG GGATTGCCGC CTGTTTGACG ACTGAAAGCC TGGATGCAAT GGGTGTTAAT ACTGATGCGT TTCCGGCTTT TAAACAACTG GACAAACAAG CGTGTGTGCC ATTGGCGGAG ATTATTCCGG ATGCCAGCGT AACGTTTAAT GTGAATAAAC TCCGTCTGGA AATTTCAGTA CCGCAAATCG CCATCAAAAG TAATGCCCGT GGTTATGTCC CCCCTGAACG TTGGGATGAA GGGATCAACG CGCTATTACT GGGATATTCG TTTAGCGGGG CTAACAGTAT TCATAGCAGC GCAGACAGTG ATTCTGGCGA CAGCTATTTT CTGAATTTAA ACAGTGGCGT TAATTTAGGC CCATGGAGAT TGCGCAACAA TTCAACATGG AGTCGCAGTA GTGGCCAAAC CGCAGAATGG AAGAATCTCA GCAGCTATTT GCAGCGGGCG GTTATTCCAC TAAAAGGCGA ACTGACCGTA GGTGATGATT ATACTGCAGG CGATTTTTTC GATAGTGTCA GCTTTCGTGG TGTGCAGCTG GCGTCAGATG ACAACATGCT GCCAGACAGC CTGAAAGGGT TTGCGCCTGT GGTGCGTGGT ATCGCCAAAA GCAATGCCCA GATAACGATT AAGCAAAATG GTTACACCAT TTACCAAACT TATGTATCGC CTGGTGCTTT TGAAATTAGT GATCTCTATT CCACGTCGTC GAGCGGTGAT TTGTTAGTTG AAATCAAAGA AGCGGACGGC AGCGTCAATA GCTACAGCGT ACCGTTTTCC AGCGTGCCAT TACTCCAGCG TCAGGGGCGA ATCAAATACG CGGTGACACT GGCGAAATAC AGAACCAATA GTAATGAACA GCAGGAGAGC AAATTTGCCC AGGCCACGTT GCAGTGGGGC GGACCGTGGG GAACGACATG GTATGGTGGT GGACAATATG CTGAATATTA CCGTGCCGCC ATGTTTGGTC TGGGATTTAA CCTTGGCGAT TTCGGAGCAA TTTCGTTCGA TGCGACCCAG GCGAAGAGTA CGCTGGCAGA CCAAAGCGAA CATAAAGGTC AGTCATATCG TTTTCTGTAT GCCAAAACGC TCAACCAATT GGGCACTAAT TTTCAATTGA TGGGCTATCG CTATTCGACG TCGGGTTTCT ACACCCTTTC CGACACCATG TATAAACATA TGGATGGCTA CGAATTTAAT GACGGTGATG ATGAAGATAC GCCGATGTGG TCGCGTTATT ACAATTTGTT TTACACCAAA CGTGGCAAAC TGCAGGTCAA TATCTCCCAG CAATTAGGCG AGTACGGTTC GTTTTATTTA AGTGGTAGCC AGCAAACTTA CTGGCATACC GATCAACAGG ATCGGCTATT ACAGTTTGGC TACAACACGC AAATTAAAGA TCTCTCGCTG GGGGTTTCCT GGAACTACAG TAAGTCCCGT GGTCAACCTG ATGCTGATCA GGTGTTTGCA CTAAATTTTT CCCTGCCGCT CAATCTGTTG CTCCCCAGAA GTAATGATAG CTATACCAGG AAAAAAAATT ACGCCTGGAT GACCTCTAAC ACCAGTATCG ATAACGAAGG GCACATTACA CAAAACCTGG GTTTAACGGA GACACTACTC GATGACGGTA ACCTGAGCTA CAGCGTGCAA CAGGGATATA ACAGCGAGGG GAAAACGGCT AATGGTAGCG CCAGCATGGA CTACAAAGGG GCGTTTGCAG ATGCCCGAGT GGGCTACAAC TACAGCGATA ACGGCAGTCA ACAACAACTG AACTACGCTC TTTCAGGCAG TTTAGTTGCC CATTCACAGG GCATTACCCT GGGGCAATCG CTGGGGGAAA CTAACGTGCT GATTGCAGCA CCAGGCGCAG AGAATACTCG TGTGGCGAAC AGCACCGGGC TGAAAACTGA CTGGCGCGGA TATACCGTTG TCCCCTATGC CACTTCTTAT CGGGAAAATC GAATCGCACT TGATGCGGCA TCGTTAAAAC GTAACGTGGA TCTTGAAAAT GCAGTCGTCA ACGTGGTTCC CACCAAAGGG GCGTTGGTTC TGGCGGAGTT CAATGCCCAT GCGGGAGCAA GGGTATTAAT GAAAACATCA AAGCAGGGTA TACCGCTGCG TTTTGGCGCG ATAGCGACGC TGGACGGCAT ACAGACTAAT AGCGGCATTA TTGATGATGA TGGCTCGCTC TATATGTCCG GTTTGCCCGC TCAGGGAGCG ATAACTGTAC GCTGGGGCGA AGCTCCCGAT CAAATTTGTC ATATCAGTTA CCAGCTTACC GAACAACAAA TTAACTCTGC GATTACGCGA ATGGATGCCA TATGCAGATA A
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Protein sequence | MYRTHRQHSL LSSGGVPSFI GGLVVFVSAA FNAQAETWFD PAFFKDDPSM VADLSRFEKG QKITPGVYRV DIVLNQTIVN TRNVNFVEIT PEKGIAACLT TESLDAMGVN TDAFPAFKQL DKQACVPLAE IIPDASVTFN VNKLRLEISV PQIAIKSNAR GYVPPERWDE GINALLLGYS FSGANSIHSS ADSDSGDSYF LNLNSGVNLG PWRLRNNSTW SRSSGQTAEW KNLSSYLQRA VIPLKGELTV GDDYTAGDFF DSVSFRGVQL ASDDNMLPDS LKGFAPVVRG IAKSNAQITI KQNGYTIYQT YVSPGAFEIS DLYSTSSSGD LLVEIKEADG SVNSYSVPFS SVPLLQRQGR IKYAVTLAKY RTNSNEQQES KFAQATLQWG GPWGTTWYGG GQYAEYYRAA MFGLGFNLGD FGAISFDATQ AKSTLADQSE HKGQSYRFLY AKTLNQLGTN FQLMGYRYST SGFYTLSDTM YKHMDGYEFN DGDDEDTPMW SRYYNLFYTK RGKLQVNISQ QLGEYGSFYL SGSQQTYWHT DQQDRLLQFG YNTQIKDLSL GVSWNYSKSR GQPDADQVFA LNFSLPLNLL LPRSNDSYTR KKNYAWMTSN TSIDNEGHIT QNLGLTETLL DDGNLSYSVQ QGYNSEGKTA NGSASMDYKG AFADARVGYN YSDNGSQQQL NYALSGSLVA HSQGITLGQS LGETNVLIAA PGAENTRVAN STGLKTDWRG YTVVPYATSY RENRIALDAA SLKRNVDLEN AVVNVVPTKG ALVLAEFNAH AGARVLMKTS KQGIPLRFGA IATLDGIQTN SGIIDDDGSL YMSGLPAQGA ITVRWGEAPD QICHISYQLT EQQINSAITR MDAICR
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