| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_0718 |
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| Symbol | speF |
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| ID | 5590857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | - |
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| Start bp | 739680 |
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| End bp | 741887 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640924434 |
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| Product | ornithine decarboxylase |
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| Protein accession | YP_001461854 |
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| Protein GI | 157158479 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000376053 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAAA TGTCAGAATT AAAAATTGCC GTTAGTCGTT CTTGCCCGGA TTTTTTTTCC
ACTCATCGTG CATGCGTGAA TATAGACGAA AGTAATTATA TTGACGTTGC CGCCATTATT
TTATCAGTCA GTGATGTTGA ACGTGGAAAA CTCGATGAAA TAGACGCTAC TGGCTATGAC
ATTCCTGTTT TTATTGCAAC GGAAAATGAA GAACGTGTAC CCGCAGAATA TCTGCCACGT
ATTTCTGGTG TCTTCGAACA TTGCGAATCA CGTAAAGAGT TTTATGGACG TCAGTTAGAA
ACCGCTGCCA GCCATTATGA AACGCAACTG CGCCCGCCCT TCTTCCGCGC ACTGGTCGAT
TATGTTAATC AGGGCAATAG TGCTTTTGAC TGCCCTGGTC ATCAGGGGGG TGAGTTTTTC
CGTCGCCATC CGGCAGGCAA TCAGTTCGTG GAATACTTTG GCGAAATGCT CTTCCGCTCT
GACTTGTGTA ATGCTGACGT AGCAATGGGC GATCTGCTGA TTCATGAAGG TGCGCCATGT
ATTGCACAAC AGCATGCGGC TAAAGTCTTT AATGCCGATA AAACCTATTT CGTTTTAAAC
GGTACTTCAT CTTCTAATAA AGTGGTCTTA AACGCATTGC TGACGCCGGG CGATCTGGTG
TTGTTTGACC GCAATAACCA TAAATCTAAC CACCACGGTG CGTTGCTACA GGCTGGCGCG
ACACCGGTTT ATCTGGAAAC CGCACGTAAC CCGTATGGCT TTATCGGTGG CATTGATGCG
CACTGTTTTG AAGAAAGTTA CCTGCGTGAG CTGATTACAG AAGTTGCACC GCAGCGGGCA
AAAGAGGCTC GTCCTTTCCG CCTCGCCGTT ATTCAGCTAG GCACTTACGA CGGTACGATT
TATAACGCCC GTCAGGTGGT GGATAAAATT GGTCATCTGT GTGACTACAT CCTCTTTGAC
TCCGCATGGG TCGGCTATGA ACAGTTTATT CCGATGATGG CTGACTGTTC GCCGCTGTTG
CTGGATCTTA ATGAGAACGA TCCGGGTATT CTGGTTACGC AATCCGTACA TAAACAGCAG
GCTGGTTTTT CTCAAACTTC ACAAATCCAT AAAAAAGACA GCCACATCAA AGGGCAACAG
CGTTATGTAC CGCACAAACG CATGAACAAC GCCTTTATGA TGCACGCCTC CACCAGCCCG
TTCTATCCGC TGTTTGCCGC ACTGGATATC AACGCCAAAA TGCATGAAGG TGTCAGCGGT
CGTAATATGT GGATGGATTG TGTGGTAAAT GGCATTAATG CCCGCAAACT GATCCTCGAT
AACTGTCAGC ATATTCGTCC GTTCGTACCT GAACTGGTGG ATGGTAAACC CTGGCAGTCG
TATGAAACGG CGCAAATTGC GGTTGATCTG CGCTTCTTCC AGTTTGTACC AGGGGAACAC
TGGCATTCTT TTGAAGGCTA TGCAGAGAAT CAATACTTTG TCGATCCTTG CAAACTGTTG
CTGACAACCC CAGGTATTGA TGCACGTAAC GGCGAATATG AAGCGTTCGG TGTACCCGCG
ACGATTCTTG CTAACTTCCT GCGCGAAAAT GGCGTAGTGC CGGAAAAATG CGATCTTAAC
TCCATCCTCT TCCTGCTGAC TCCGGCAGAA GATATGGCCA AGCTTCAGCA ACTTGTTGCC
CTGCTGGTAC GCTTCGAAAA ACTGCTTGAG TCCGACGCGC CATTAGCAGA AGTGCTGCCT
TCCATCTACA AACAGCATGA AGAGCGCTAC GCCGGTTATA CCCTGCGTCA GTTGTGTCAA
GAAATGCATG ATTTGTATGC CCGTCACAAC GTGAAACAAC TGCAAAAAGA GATGTTCCGT
AAGGAACACT TCCCACGCGT AAGCATGAAT CCGCAAGAAG CCAACTACGC CTATTTACGC
GGTGAAGTGG AGCTGGTTCG TCTGCCGGAT GCAGAAGGCC GTATCGCTGC CGAAGGTGCG
CTTCCTTATC CTCCGGGTGT GCTGTGTGTT GTTCCGGGTG AAATCTGGGG TGGTGCTGTT
TTGCGTTACT TCAGCGCTCT GGAAGAAGGG ATCAACCTGC TGCCAGGTTT TGCACCGGAG
CTGCAGGGTG TCTATATCGA AGAACATGAT GGTCGTAAGC AAGTTTGGTG CTATGTCATC
AAGCCTCGTG ATGCGCAAAG CACCCTGTTG AAAGGGGAAA AATTATGA
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| Protein sequence | MNKMSELKIA VSRSCPDFFS THRACVNIDE SNYIDVAAII LSVSDVERGK LDEIDATGYD
IPVFIATENE ERVPAEYLPR ISGVFEHCES RKEFYGRQLE TAASHYETQL RPPFFRALVD
YVNQGNSAFD CPGHQGGEFF RRHPAGNQFV EYFGEMLFRS DLCNADVAMG DLLIHEGAPC
IAQQHAAKVF NADKTYFVLN GTSSSNKVVL NALLTPGDLV LFDRNNHKSN HHGALLQAGA
TPVYLETARN PYGFIGGIDA HCFEESYLRE LITEVAPQRA KEARPFRLAV IQLGTYDGTI
YNARQVVDKI GHLCDYILFD SAWVGYEQFI PMMADCSPLL LDLNENDPGI LVTQSVHKQQ
AGFSQTSQIH KKDSHIKGQQ RYVPHKRMNN AFMMHASTSP FYPLFAALDI NAKMHEGVSG
RNMWMDCVVN GINARKLILD NCQHIRPFVP ELVDGKPWQS YETAQIAVDL RFFQFVPGEH
WHSFEGYAEN QYFVDPCKLL LTTPGIDARN GEYEAFGVPA TILANFLREN GVVPEKCDLN
SILFLLTPAE DMAKLQQLVA LLVRFEKLLE SDAPLAEVLP SIYKQHEERY AGYTLRQLCQ
EMHDLYARHN VKQLQKEMFR KEHFPRVSMN PQEANYAYLR GEVELVRLPD AEGRIAAEGA
LPYPPGVLCV VPGEIWGGAV LRYFSALEEG INLLPGFAPE LQGVYIEEHD GRKQVWCYVI
KPRDAQSTLL KGEKL
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