Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_0228 |
Symbol | |
ID | 5588746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | - |
Start bp | 243795 |
End bp | 247319 |
Gene Length | 3525 bp |
Protein Length | 1174 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640923957 |
Product | hypothetical protein |
Protein accession | YP_001461387 |
Protein GI | 157155738 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.164141 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTCAGAT TACCAACACC CCGACTACTC AGCGGACTCA AATCAGCCCT GCGACCGGCG ATGCCCCGGT TTAAAATCTC TGCTTTCTGG CTGCTGATAC TGGCGTGGAT TTTTCTGCTG GTGTGGATCT GGTGGAAAGG CCCGATGTGG ACGCTGTATG AAGAACAGTG GCTCAAACCA CTGGCGAACC GCTGGCTGGC AACGGCGGCG TGGGGGATTA TTGCCCTGGT GTGGCTTACC GTCCGGGTGA TGAAGCGCCT GCAACAGCTT GAAAAAATGC AAAAGCAACA GCGCGAGGAA GCCGTTGATC CGCTCAGCGT GGAACTGAAC GCCCAGCAGC GTTATCTTGA CCGCTGGCTG CTGCGCCTGC AACGCCATCT CGACAACCGC CGTTTCCTGT GGCAGTTGCC GTGGTATATG GTCATCGGCC CGGCGGGCAG TGGCAAAACG ACACTGCTGC GCGAGGGGTT TCCGTCCGAC ATTATTTATG CCCCGGAGGG CGCACGCGGC GCAGAACAAC GCCTGTACCT CACGCCCCAT GTCGGTAAAC AGGCGGTGAT CTTTGATATC GACGGCACAC TCTGCGCTCC CGCTGATGCG GATATCCTGC ATCGCCGTCT GTGGGAACAT GCCCTCGGCT GGCTGAAAGA AAAGCGCGCG CGCCAGCCGC TGAACGGGAT TATTCTGACA CTCGATTTAC CCGATCTACT GACCGCAGAC AAACGCCGCC GCGAGCATCT GTTACAGACG CTGCGCAGCC GCTTACAGGA TATACGCCAG CATCTTCACT GCCAGTTACC GGTTTACGTG GTACTGACCC GGCTTGATTT ATTACAGGGT TTTGCCGCCC TGTTCCAGTC ACTCAACAGA CAGGATCGCG ATGCGATTCT GGGCGTCACG TTCACCCGCC GTGCCCATGA AAATGATGAC TGGCGAACAG AGTTGAATGC TTTCTGGCAG ACATGGGTGG ATCGAATGAA TCTGGCGTTG CCGGATCTGA TGGTCGCTCA GACTCACACC CGCGCGTCTT TATTCAGTTT TTCCCGCCAG ATGCAGGGAA GCCGTGAACC GCTGGTGTCA CTGCTTGAGG GTCTGCTTGA TGGCGAAAAT ATGAACGTGA TGCTGCGTGG TGTCTATCTC ACCTCTTCGC TTCAGCGTGG ACAGATGGAT GATATATTCA CCCAGTCTGC CGCCCGCCAG TACCGGCTGG GCAATAACCC ACTGGCGTCC TGGCCCCTGG TGGACACCGC GCCTTATTTC ACCCGCAGCC TGTTCCCGCA GGCATTACTC GCAGAGCCTA ATCTGGCAAC AGAGAGCCGC GCCTGGCTGA TACGTTCCCG TCGCCGCCTG ACGGTTTTCT CTGCCACAGG CGGCGTGGCA GCACTGCTGC TCATCACCGG CTGGCATCAC TATTACAACG GTAACTATCA GTCCGGCATC ACCGTGCTTA AGCAGGCCAA AGCCTTTATG GACGTGCCGC CTCCGCAGGG GGAAGATGAC TTTGGCAACC TGCAACTGCC GCTCCTGAAC CCGGTACGCG ATGCCACACT GGCCTATGGC GACTGGGGCG ACCGCAGCCG TCTGGCCGAT ATGGGACTGT ACCAGGGACG ACGTATCGGG CCTTATGTGG AACAGACCTA TCTGCAACTG CTGGAGCAAC GTTACCTGCC CTCGCTGTTT AACGGGCTGG TCAAAGCGAT GAACGCCGCG CCGCCGGAGA GTGAAGAAAA ACTCGCGGTG CTGCGCGTGA TGCGAATGCT GGAGGACAAA AGCGGACGTA ACAATCAGGT GGTGAAGCAG TATATGGCAA AACGCTGGAG CGAAAAATTC CACGGCCAGC GCGATATCCA GGCACAACTG ATGTCCCATC TTGACTACGC GCTGGCTCAT ACTGACTGGC ATGCAGAGCG TCAGGCGGGC GACGGTGACG CCATCAGCCG CTGGACGCCA TATGACAAGC CCGTGGTATC AGCACAGAAA GAACTGAGCA AACTGCCTGT CTACCAGCGG GTTTACCAGA GTCTGAAAAC GCGGGCGCTG GGCGTTCTTC CTGCCGACCT CAATCTGCGT GACCAGGTAG GGCCAACCTT TGACCAGGTG TTTACATCTG CCGATGACAA CAAACTGGTT GTTCCACAGT TTCTTACCCG TTACGGCCTG CAAAGCTATT TTGTAAAACA GCGCGATGAA CTGGTTGAAC TGACGGCGAT GGATTCCTGG GTACTTAACC TCACCCGCAA TGTGAAATAC AGTGACGCCG ACCGCGCGGA AATCCAGCGC CAGTTGACCG AGCAGTATAT CAGCGACTAC ACCGCCACCT GGCGGGCCGG GATGGACAAT CTGAATATCC GCAATTTTGA GTCCATCGGA CAACTGACCG GGGCGCTGGA GCAGGTTATC AGCGGCGACC AGCCTTTGCA GCGGGCGCTG ACCGTGCTGC GTGACAACAC ACAGCCAGGC GTCTTTTCTG AAAAACTCTC TGCCAAAGAA CGGGAGGAAG CCCTGGCAGA GCCGGATTAC CAGTTACTCA CCCGCCTCGG GCATGAATTC GCCCCGGAAA ACAGTACCCT GGCAGTACAG AAAGACAAAG AAAGCACGAT GCAGGCCGTG TATCAGCAAC TCACCGAGTT GCACCGCTAC CTGCTGGCAA TCCAGAACGC GCCTGTACCA GGGAAATCGG CGCTGAAAGC CGTGCAGTTA CGGCTTGATC AGAACAGCAG CGATCCGATA TTCGCCACCC GCCAGATGGC AAAAACGCTG CCTGCTCCGC TCAACCGCTG GGTTGGCAGG CTGGCTGACC AGGCCTGGCA TGTGGTGATG GTGGAGGCTG TTCATTATAT GGAAGTGGAC TGGCGCGACA GCGTGGTGAA ACCGTTTAAC GAGCAACTGG CAAATAACTA TCCGTTTAAT CCGCGTTCTG CACAGGATGC CTCACTGGAT GCCTTCGAAC GCTTCTTTAA ACCGGATGGC ATACTGGATA CCTTCTACCA GCAGAACCTG AAGCTGTTTA TCGATAATGA CCTGAGTCTG GAGGATGGCG ATAACAACGT CATTATTCGC GAAGATATTA TTGCGCAACT GGAAACTGCG CAGAAAATCC GTGACATCTT CTTCAGCAAA CAGAACGGTC TGGGAACATC CTTTGCCGTG GAAACGGTAT CGCTTTCAGG CAATAAACGC CGCAGTGTAC TGAACCTTGA CGGTCAGTTA GTCGATTACA GCCAGGGCCG TAACTATACC GCCCATCTGG TCTGGCCTAA CAACATGCGC GAAGGCAACG AAAGTAAGCT GACGCTCATC GGCACCAGCG GCAACGCGCC GCGCAGTATC AGCTTCAGCG GGCCGTGGGC GCAGTTCCGC CTGTTCGGGG CCGGACAACT GACCGGAGTA CAGGATGGCA ACTTTACCGT GCGCTTTAGC GTGGACGGTG GCGCGATGAC CTACCGTGTG CATACCGACA CGGAAGATAA CCCGTTCAGC GGTGGGTTGT TCAGCCAGTT TGGTCTGTCA GACACACTGT ACTGA
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Protein sequence | MFRLPTPRLL SGLKSALRPA MPRFKISAFW LLILAWIFLL VWIWWKGPMW TLYEEQWLKP LANRWLATAA WGIIALVWLT VRVMKRLQQL EKMQKQQREE AVDPLSVELN AQQRYLDRWL LRLQRHLDNR RFLWQLPWYM VIGPAGSGKT TLLREGFPSD IIYAPEGARG AEQRLYLTPH VGKQAVIFDI DGTLCAPADA DILHRRLWEH ALGWLKEKRA RQPLNGIILT LDLPDLLTAD KRRREHLLQT LRSRLQDIRQ HLHCQLPVYV VLTRLDLLQG FAALFQSLNR QDRDAILGVT FTRRAHENDD WRTELNAFWQ TWVDRMNLAL PDLMVAQTHT RASLFSFSRQ MQGSREPLVS LLEGLLDGEN MNVMLRGVYL TSSLQRGQMD DIFTQSAARQ YRLGNNPLAS WPLVDTAPYF TRSLFPQALL AEPNLATESR AWLIRSRRRL TVFSATGGVA ALLLITGWHH YYNGNYQSGI TVLKQAKAFM DVPPPQGEDD FGNLQLPLLN PVRDATLAYG DWGDRSRLAD MGLYQGRRIG PYVEQTYLQL LEQRYLPSLF NGLVKAMNAA PPESEEKLAV LRVMRMLEDK SGRNNQVVKQ YMAKRWSEKF HGQRDIQAQL MSHLDYALAH TDWHAERQAG DGDAISRWTP YDKPVVSAQK ELSKLPVYQR VYQSLKTRAL GVLPADLNLR DQVGPTFDQV FTSADDNKLV VPQFLTRYGL QSYFVKQRDE LVELTAMDSW VLNLTRNVKY SDADRAEIQR QLTEQYISDY TATWRAGMDN LNIRNFESIG QLTGALEQVI SGDQPLQRAL TVLRDNTQPG VFSEKLSAKE REEALAEPDY QLLTRLGHEF APENSTLAVQ KDKESTMQAV YQQLTELHRY LLAIQNAPVP GKSALKAVQL RLDQNSSDPI FATRQMAKTL PAPLNRWVGR LADQAWHVVM VEAVHYMEVD WRDSVVKPFN EQLANNYPFN PRSAQDASLD AFERFFKPDG ILDTFYQQNL KLFIDNDLSL EDGDNNVIIR EDIIAQLETA QKIRDIFFSK QNGLGTSFAV ETVSLSGNKR RSVLNLDGQL VDYSQGRNYT AHLVWPNNMR EGNESKLTLI GTSGNAPRSI SFSGPWAQFR LFGAGQLTGV QDGNFTVRFS VDGGAMTYRV HTDTEDNPFS GGLFSQFGLS DTLY
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