| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A4374 |
|---|
| Symbol | cadC |
|---|
| ID | 5590982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 4384419 |
|---|
| End bp | 4385957 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640923472 |
|---|
| Product | DNA-binding transcriptional activator CadC |
|---|
| Protein accession | YP_001460917 |
|---|
| Protein GI | 157163599 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.00319503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAC CTGTAGTTCG CGTTGGCGAA TGGCTTGTTA CTCCGTCCAT AAACCAAATT
AGCCGCAATG GGCGTCAACT TACCCTTGAG CCGAGATTAA TCGATCTTCT GGTTTTCTTT
GCTCAACACA GTGGCGAAGT ACTTAGCAGG GATGAACTTA TCGATAATGT CTGGAAGAGA
AGTATTGTCA CCAATCATGT TGTGACGCAG AGTATCTCAG AACTACGTAA GTCATTAAAA
GATAATGATG AAGATAGTCC TGTCTATATC GCTACTGTAC CAAAGCGCGG CTATAAATTA
ATGGTGCCGG TTATCTGGTA CAGCGAAGAA GAGGGAGAGG AAATAATGCT ATCTTCGCCT
CCCCCTATAC CAGAGGCGGT TCCTGCCACA GATTCTCCCT CCCACAGTCT TAACATTCAA
AACACCGCAA CGCCACCTGA ACAATCCCCA ATTAAAAGCA AACGATTCAC TACCTTTTGG
GTATGGTTTT TTTTCCTGTT GTCGTTAGGT ATCTGTGTAG CACTGGTAGC GTTTTCAACT
CTTGATACAC GTCTTCCTAT GAGCAAATCG CGTATTTTGC TCAATCCACG CGATATTGAC
ATTAATATGG TAAATAAAAG TTGTAACAGC TGGAGTTCCC CGTATCAGCT CTCTTACGCG
ATAGGCGTGG GTAATTTGGT GGCGACATCA CTTAACACCT TCTCCACCTT TATGGTGCAT
GACAAAATCA ACTACAACAT TGATGAACCG AGCAGTTCCG GTAAAACATT ATCTATTGCC
TTTGTTAATC AGCGCCAATA CCGTGCTCAA CAATGCTTTA TGTCGATAAA ATTGGTAGAC
AATGCAGATG GTTCAACCAT GCTGGATAAA CGTTATGTCA TCACTAACGG TAATCAGCTG
GCGATTCAAA ATGATTTACT GGAGAGTTTA TCAAAAGCGT TAAACCAACC GTGGCCACAA
CGAATGCAGG AGACGCTCCA GCAAATATTG CCTCATCGTG GTGCGTTATT AACTAATTTT
TATCAGGCAC ATGATTATTT ACTGCATGGC GATGATAAAT CATTGAATCG TGCCAGTGAA
TTATTAGGTG AGATTGTTCA ATCATCCCCA GAATTTACCT ACGCGAGAGC AGAAAAAGCA
TTAGTTGATA TCGTGCGCCA TTCTCAACAT CCTTTAGATG AAAAACAATT AGCAGCACTG
AACACAGAAA TAGACAACAT TGTTACACTG CCGGAATTGA ATAATCTGTC CATTATATAT
CAAATAAAAG CGGTCAGTGC TCTGGTAAAA GGTAAAACAG ATGAGTCTTA CCAGGCGATA
AATACTGGCA TTGATCTTGA AATGTCCTGG CTAAATTATG TGTTGCTTGG CAAGGTTTAT
GAAATGAAGG GGATGAACCG GGAAGCGGCT GATGCATATC TCACCGCCTT TAATTTACGC
CCAGGGGCAA ACACCCTTTA CTGGATTGAA AATGGTATAT TCCAGACTTC TGTTCCTTAT
GTTGTACCTT ATCTCGACAA ATTTCTCGCT TCAGAATAA
|
|---|
| Protein sequence | MQQPVVRVGE WLVTPSINQI SRNGRQLTLE PRLIDLLVFF AQHSGEVLSR DELIDNVWKR
SIVTNHVVTQ SISELRKSLK DNDEDSPVYI ATVPKRGYKL MVPVIWYSEE EGEEIMLSSP
PPIPEAVPAT DSPSHSLNIQ NTATPPEQSP IKSKRFTTFW VWFFFLLSLG ICVALVAFST
LDTRLPMSKS RILLNPRDID INMVNKSCNS WSSPYQLSYA IGVGNLVATS LNTFSTFMVH
DKINYNIDEP SSSGKTLSIA FVNQRQYRAQ QCFMSIKLVD NADGSTMLDK RYVITNGNQL
AIQNDLLESL SKALNQPWPQ RMQETLQQIL PHRGALLTNF YQAHDYLLHG DDKSLNRASE
LLGEIVQSSP EFTYARAEKA LVDIVRHSQH PLDEKQLAAL NTEIDNIVTL PELNNLSIIY
QIKAVSALVK GKTDESYQAI NTGIDLEMSW LNYVLLGKVY EMKGMNREAA DAYLTAFNLR
PGANTLYWIE NGIFQTSVPY VVPYLDKFLA SE
|
|---|
| |