Gene EcHS_A4372 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A4372 
SymbolldcC2 
ID5593371 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp4380492 
End bp4382639 
Gene Length2148 bp 
Protein Length715 aa 
Translation table11 
GC content48% 
IMG OID640923470 
Productlysine decarboxylase, constitutive 
Protein accessionYP_001460915 
Protein GI157163597 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1982] Arginine/lysine/ornithine decarboxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.152714 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGTTA TTGCAATATT GAATCACATG GGGGTTTATT TTAAAGAAGA ACCCATCCGT 
GAACTTCATC GCGCGCTTGA ACGTCTGAAC TTCCAGATTG TTTACCCGAA CGACCGTGAC
GACTTATTAA AACTGATCGA AAACAATGCG CGTCTGTGCG GCGTTATTTT TGACTGGGAT
AAATATAATC TCGAGCTGTG CGAAGAAATT AGCAAAATGA ACGAGAACCT GCCGTTGTAC
GCGTTCGCTA ATACGTATTC CACTCTCGAT GTAAGCCTGA ATGACCTGCG TTTACAGATT
AGCTTCTTTG AATATGCGCT GGGTGCTGCT GAAGATATTG CTAATAAGAT CAAGCAGACC
ACTGACGAAT ATATCAACAC TATTCTGCCT CCGCTGACTA AAGCACTGTT TAAATATGTT
CGTGAAGGTA AATATACTTT CTGTACTCCT GGTCACATGG GCGGTACTGC ATTCCAGAAA
AGCCCGGTAG GTAGCCTGTT CTATGATTTC TTTGGTCCGA ACACCATGAA ATCTGATATT
TCCATTTCAG TATCTGAACT GGGTTCTCTG CTGGATCACA GTGGTCCACA CAAAGAAGCA
GAACAGTATA TCGCTCGCGT CTTTAACGCA GACCGCAGCT ACATGGTGAC CAACGGTACT
TCCACTGCGA ACAAAATTGT TGGTATGTAC TCTGCTCCAG CAGGCAGCAC CATTCTGATT
GACCGTAACT GCCACAAATC GCTGACCCAC CTGATGATGA TGAGCGATGT TACGCCAATC
TATTTCCGCC CGACCCGTAA CGCTTACGGT ATTCTTGGTG GTATCCCACA GAGTGAATTC
CAGCACGCTA CCATTGCTAA GCGCGTGAAA GAAACACCAA ACGCAACCTG GCCGGTACAT
GCTGTAATTA CCAACTCTAC CTATGATGGT CTGCTGTACA ACACCGACTT TATCAAGAAA
ACACTGGATG TGAAATCCAT CCACTTTGAC TCCGCGTGGG TGCCTTACAC CAACTTCTCA
CCGATTTACG AAGGTAAATG CGGTATGAGC GGTGGCCGTG TAGAAGGGAA AGTGATTTAC
GAAACCCAGT CCACTCACAA ACTGCTGGCG GCGTTCTCTC AGGCTTCCAT GATCCACGTT
AAAGGTGACG TAAACGAAGA AACCTTTAAC GAAGCCTACA TGATGCACAC CACCACTTCT
CCGCACTACG GTATCGTGGC GTCCACTGAA ACCGCTGCGG CGATGATGAA AGGCAATGCA
GGTAAACGTC TGATCAACGG TTCCATTGAA CGTGCGATCA AATTCCGTAA AGAGATCAAA
CGTCTGAGAA CGGAATCTGA TGGCTGGTTC TTTGATGTAT GGCAGCCGGA TCATATCGAT
ACGACTGAAT GCTGGCCGCT GCGTTCTGAC AGCACCTGGC ACGGCTTCAA AAACATCGAT
AACGAGCACA TGTATCTTGA CCCGATCAAA GTCACCCTGC TGACTCCGGG GATGGAAAAA
GACGGCACCA TGAGCGACTT TGGTATTCCG GCCAGCATCG TGGCGAAATA CCTCGACGAA
CATGGCATCG TTGTTGAGAA AACCGGTCCG TATAACCTGC TGTTCCTGTT CAGCATCGGT
ATCGATAAGA CCAAAGCACT GAGCCTGCTG CGTGCTCTGA CTGACTTCAA ACGTGCGTTC
GACCTGAACC TGCGTGTGAA AAACATGCTG CCGTCTCTGT ATCGTGAAGA TCCTGAATTC
TATGAAAACA TGCGTATTCA GGAACTGGCT CAGAATATCC ACAAACTGAT TGTTCACCAC
AATCTGCCGG ATCTGATGTA TCGCGCATTT GAAGTGCTGC CGACGATGGT AATGACTCCG
TATGCTGCGT TCCAGAAAGA GCTGCACGGT ATGACCGAAG AAGTTTACCT CGACGAAATG
GTAGGTCGTA TTAACGCCAA TATGATCCTT CCATATCCGC CGGGAGTTCC TCTGGTAATG
CCGGGTGAAA TGATCACCGA AGAAAGCCGT CCGGTTCTGG AGTTCCTGCA GATGCTGTGT
GAAATCGGCG CTCACTATCC GGGCTTTGAA ACCGATATTC ACGGTGCATA CCGTCAGGCT
GATGGCCGCT ATACCGTTAA GGTATTGAAA GAAGAAAGCA AAAAATAA
 
Protein sequence
MNVIAILNHM GVYFKEEPIR ELHRALERLN FQIVYPNDRD DLLKLIENNA RLCGVIFDWD 
KYNLELCEEI SKMNENLPLY AFANTYSTLD VSLNDLRLQI SFFEYALGAA EDIANKIKQT
TDEYINTILP PLTKALFKYV REGKYTFCTP GHMGGTAFQK SPVGSLFYDF FGPNTMKSDI
SISVSELGSL LDHSGPHKEA EQYIARVFNA DRSYMVTNGT STANKIVGMY SAPAGSTILI
DRNCHKSLTH LMMMSDVTPI YFRPTRNAYG ILGGIPQSEF QHATIAKRVK ETPNATWPVH
AVITNSTYDG LLYNTDFIKK TLDVKSIHFD SAWVPYTNFS PIYEGKCGMS GGRVEGKVIY
ETQSTHKLLA AFSQASMIHV KGDVNEETFN EAYMMHTTTS PHYGIVASTE TAAAMMKGNA
GKRLINGSIE RAIKFRKEIK RLRTESDGWF FDVWQPDHID TTECWPLRSD STWHGFKNID
NEHMYLDPIK VTLLTPGMEK DGTMSDFGIP ASIVAKYLDE HGIVVEKTGP YNLLFLFSIG
IDKTKALSLL RALTDFKRAF DLNLRVKNML PSLYREDPEF YENMRIQELA QNIHKLIVHH
NLPDLMYRAF EVLPTMVMTP YAAFQKELHG MTEEVYLDEM VGRINANMIL PYPPGVPLVM
PGEMITEESR PVLEFLQMLC EIGAHYPGFE TDIHGAYRQA DGRYTVKVLK EESKK