Gene EcHS_A4228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A4228 
SymbolthiC 
ID5591988 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp4223786 
End bp4225681 
Gene Length1896 bp 
Protein Length631 aa 
Translation table11 
GC content56% 
IMG OID640923332 
Productthiamine biosynthesis protein ThiC 
Protein accessionYP_001460781 
Protein GI157163463 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0422] Thiamine biosynthesis protein ThiC 
TIGRFAM ID[TIGR00190] thiamine biosynthesis protein ThiC 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGCAA CAAAACTGAC CCGCCGCGAA CAACGCGCCC GGGCCCAACA TTTTATCGAC 
ACCCTGGAAG GCACCGCCTT TCCCAACTCA AAACGCATTT ATATCACTGG CACACACCCC
GGCGTGCGCG TGCCGATGCG TGAGATCCAG CTTAGCCCGA CGCTAATTGG CGGTAGCAAA
GAACAGCCGC AGTACGAAGA AAACGAAGCG ATTCCGGTCT ACGACACCTC CGGCCCGTAT
GGTGATCCGC AGATTGCCAT TAACGTGCAG CAAGGGCTGG CAAAACTACG CCAGCCGTGG
ATCGATGCGC GCGGCGATAC CGAAGAACTT ACCGTGCGCA GTTCCGATTA CACTAAAGCG
CGGCTGGCAG ATGATGGCCT CGACGAACTG CGTTTTAGCG GTGTACTAAC ACCAAAACGC
GCCAAAGCAG GACGCCGTGT CACCCAACTG CACTACGCCC GCCAGGGCAT CATCACGCCG
GAAATGGAAT TCATCGCCAT CCGCGAGAAT ATGGGCCGCG AGCGCATCCG TAGCGAGGTT
TTACGCCACC AGCATCCGGG AATGAGCTTT GGCGCACATC TGCCGGAAAA TATCACTGCG
GAATTTGTCC GTGATGAAGT TGCTGCCGGA CGTGCGATTA TCCCGGCCAA CATTAATCAT
CCGGAATCGG AGCCGATGAT TATTGGTCGC AATTTCCTGG TAAAAGTTAA CGCCAATATC
GGCAACTCGG CGGTCACCTC TTCCATCGAA GAAGAAGTGG AAAAGCTGGT ATGGTCCACG
CGCTGGGGAG CGGATACGGT GATGGATCTC TCCACCGGTC GCTATATTCA CGAAACCCGC
GAGTGGATTT TGCGTAACAG CCCGGTGCCG ATCGGTACAG TGCCGATCTA CCAGGCGCTG
GAGAAGGTTA ACGGGATCGC CGAAGATCTT ACCTGGGAAG CGTTCCGCGA CACGCTGCTG
GAACAGGCCG AGCAAGGTGT GGATTACTTC ACTATCCATG CGGGCGTACT GCTGCGCTAT
GTGCCGATGA CCGCGAAACG CCTGACCGGT ATCGTCTCTC GCGGCGGTTC GATTATGGCG
AAATGGTGCC TCTCCCATCA TCAGGAAAAT TTCCTCTATC AACACTTCCG CGAAATTTGT
GAAATCTGTG CCGCTTATGA CGTTTCGCTG TCGCTGGGCG ACGGTCTGCG CCCCGGTTCT
ATTCAGGACG CCAACGATGA AGCGCAGTTT GCCGAGCTGC ATACGCTGGG CGAACTGACC
AAAATTGCCT GGGAATATGA CGTGCAGGTG ATGATTGAAG GCCCAGGTCA CGTGCCGATG
CAGATGATCC GCCGCAATAT GACCGAGGAG TTAGAGCACT GCCACGAAGC GCCGTTTTAC
ACTCTGGGGC CGCTAACTAC CGATATTGCG CCGGGCTATG ACCACTTCAC GTCGGGGATT
GGTGCGGCGA TGATTGGCTG GTTTGGCTGC GCGATGCTCT GTTACGTAAC GCCAAAAGAG
CATCTGGGTC TGCCTAATAA AGAAGATGTT AAGCAGGGGC TTATCACCTA TAAGATTGCC
GCCCACGCCG CTGACCTGGC GAAAGGGCAT CCGGGCGCGC AAATTCGCGA TAACGCCATG
TCGAAAGCCC GCTTCGAATT TCGCTGGGAA GACCAGTTTA ATCTGGCCCT CGACCCGTTT
ACCGCCCGCG CTTATCACGA TGAAACCCTG CCGCAAGAGT CAGGTAAAGT CGCCCATTTT
TGCTCCATGT GTGGGCCGAA ATTCTGTTCG ATGAAAATCA GCCAGGAAGT GCGTGATTAC
GCCGCCACGC AAACTATTGA AATGGGAATG GCGGATATGT CGGAGAACTT CCGTGCCAGA
GGCGGAGAAA TCTACCTGCG TAAGGAGGAA GCGTGA
 
Protein sequence
MSATKLTRRE QRARAQHFID TLEGTAFPNS KRIYITGTHP GVRVPMREIQ LSPTLIGGSK 
EQPQYEENEA IPVYDTSGPY GDPQIAINVQ QGLAKLRQPW IDARGDTEEL TVRSSDYTKA
RLADDGLDEL RFSGVLTPKR AKAGRRVTQL HYARQGIITP EMEFIAIREN MGRERIRSEV
LRHQHPGMSF GAHLPENITA EFVRDEVAAG RAIIPANINH PESEPMIIGR NFLVKVNANI
GNSAVTSSIE EEVEKLVWST RWGADTVMDL STGRYIHETR EWILRNSPVP IGTVPIYQAL
EKVNGIAEDL TWEAFRDTLL EQAEQGVDYF TIHAGVLLRY VPMTAKRLTG IVSRGGSIMA
KWCLSHHQEN FLYQHFREIC EICAAYDVSL SLGDGLRPGS IQDANDEAQF AELHTLGELT
KIAWEYDVQV MIEGPGHVPM QMIRRNMTEE LEHCHEAPFY TLGPLTTDIA PGYDHFTSGI
GAAMIGWFGC AMLCYVTPKE HLGLPNKEDV KQGLITYKIA AHAADLAKGH PGAQIRDNAM
SKARFEFRWE DQFNLALDPF TARAYHDETL PQESGKVAHF CSMCGPKFCS MKISQEVRDY
AATQTIEMGM ADMSENFRAR GGEIYLRKEE A