| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A4043 |
|---|
| Symbol | rarD |
|---|
| ID | 5593303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 4033765 |
|---|
| End bp | 4034655 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640923147 |
|---|
| Product | RarD protein |
|---|
| Protein accession | YP_001460613 |
|---|
| Protein GI | 157163295 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2962] Predicted permeases |
|---|
| TIGRFAM ID | [TIGR00688] rarD protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAA AACAAACGCG GCAGGGCGTA TTACTCGCTC TTGCCGCTTA TTTTATTTGG
GGTATAGCGC CAGCGTACTT CAAGTTGATT TACTACGTGC CCGCCGATGA AATCCTGACG
CATCGCGTGA TCTGGTCGTT TTTCTTTATG GTGGTGCTGA TGAGCATTTG CCGCCAGTGG
TCCTATTTAA AAACGCTGAT TCAGACGCCA CAGAAAATTT TTATGCTGGC AGTCTCTGCC
GTGCTGATTG GTGGCAACTG GCTACTGTTT ATCTGGGCGG TGAACAATCA CCATATGCTG
GAAGCGAGCC TTGGTTACTT TATTAACCCG CTGGTGAACA TTGTGCTGGG GATGATTTTC
CTCGGCGAGC GATTCCGCCG GATGCAATGG CTGGCGGTGA TTCTGGCGAT ATGTGGCGTG
TTAGTCCAGC TGTGGACTTT TGGTTCGCTA CCTATTATCG CGCTGGGACT GGCATTTAGT
TTTGCCTTCT ACGGTCTGGT ACGCAAGAAG ATTGCCGTTG AAGCGCAAAC CGGCATGTTA
ATCGAAACCA TGTGGCTGCT GCCCGTGGCG GCAATTTACC TGTTTGCTAT TGCCGACAGC
TCAACCAGCC ATATGGGGCA AAACCCGATG TCGCTGAATT TACTGCTGAT CGCCGCCGGT
ATTGTCACTA CCGTACCGCT GTTGTGTTTT ACCGCCGCTG CCACGCGCTT GCGTCTCTCA
ACGTTAGGCT TTTTCCAGTA CATTGGCCCG ACGCTGATGT TCCTGCTGGC TGTGACGTTT
TATGGTGAAA AACCGGGTGC CGATAAGATG GTGACTTTCG CCTTTATTTG GGTGGCGCTG
GCAATTTTTG TGATGGATGC GATTTATACG CAGCGTAGAA CGTCCAAATA A
|
|---|
| Protein sequence | MDAKQTRQGV LLALAAYFIW GIAPAYFKLI YYVPADEILT HRVIWSFFFM VVLMSICRQW
SYLKTLIQTP QKIFMLAVSA VLIGGNWLLF IWAVNNHHML EASLGYFINP LVNIVLGMIF
LGERFRRMQW LAVILAICGV LVQLWTFGSL PIIALGLAFS FAFYGLVRKK IAVEAQTGML
IETMWLLPVA AIYLFAIADS STSHMGQNPM SLNLLLIAAG IVTTVPLLCF TAAATRLRLS
TLGFFQYIGP TLMFLLAVTF YGEKPGADKM VTFAFIWVAL AIFVMDAIYT QRRTSK
|
|---|
| |