| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3858 |
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| Symbol | ligB |
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| ID | 5592937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | - |
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| Start bp | 3849071 |
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| End bp | 3850759 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640922968 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_001460446 |
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| Protein GI | 157163128 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 58 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATGATGA AAGTATGGAT GGCGATATTA ATAAGTATCT TGTGCTGGCA ATCATCTGTG
TGGGCGGTCT GTCCGGCCTG GTCGCCAGCC AGAGCACAGG AAGAAATTTC CCGCCTGCAA
CAGCAAATAA AACAGTGGGA CGATGTCTAC TGGAAGGAAG GAAAAAGTGA GGTGGAAGAC
GGTGTTTACG ATCAGTTAAG CGCCCGTCTT ACGCAGTGGC AACGCTGCTT TGGGAGCGAG
CCCCGCGACG TGATGATGCC GCCTTTAAAT GGTGCGGTTA TGCATCCGGT TGCCCATACG
GGTGTACGCA AAATGGTGGA TAAAAACGCA TTAAGTCTGT GGATGCGAGA ACGTAGCGAT
CTTTGGGTGC AGCCAAAAGT TGATGGCGTT GCGGTAACCC TGGTTTATCG GGACGGGAAA
CTGAACAAAG CAATCAGTCG CGGTAATGGC CTGAAAGGCG AGGACTGGAC GCAGAAAGTT
AGCTTAATTT CCGCTGTGCC GCAAACCGTT AGCGGGCCTT TAGCCAACAG TACGCTTCAG
GGGGAAATAT TTCTCCAGCG CGAGGGGCAT ATCCAACAAC AAATGGGGGG AATAAATGCC
CGCGCAAAAG TTGCTGGCTT GATGATGCGC CAGGACGATA GCGACACGCT GAATTCTCTG
GGCGTTTTTG TCTGGGCATG GCCGGATGGA CCGCAGTTAA TGTCTGATCG TTTAAAAGAG
CTGGCTACCG CAGGTTTTAC TCTAACGCAG ACGTATACCC GTGCGGTGAA AAATGCTGAT
GAAGTTGCGC GCGTACGCAA TGAGTGGTGG AAAGCGGAAT TACCCTTCGT CACCGATGGC
GTAGTTGTAC GAGCGGCGAA AGAGCCAGAA TCCCGCCATT GGCTACCGGG CCAGGCAGAG
TGGCTGGTGG CCTGGAAATA TCAACCTGTA GCTCAGGTTG CCGAAGTGAA GGCAATTCAG
TTTGCGGTGG GTAAGAGCGG TAAAATATCG GTGGTTGCGT CACTCGCACC TGTCATGCTG
GATGATAAAA AAGTCCAGCG GGTGAATATT GGTTCCGTCA GGCGCTGGCA GGAGTGGGAT
ATTGCGCCTG GTGATCAGAT TCTCGTCAGC CTTGCCGGTC AGGGTATTCC TCGCATTGAT
GATGTGGTGT GGCGCGGTGC AGAACGTACA AAACCGACAC CGCCAGAAAA CCGCTTTAAC
TCGTTGACCT GCTACTTTGC TTCTGATGTT TGTCAGGAAC AGTTCATTTC ACGCTTAGTC
TGGCTGGGGG CAAAACAGGT TCTTGGGCTG GATGGCATTG GTGAGGCCGG CTGGCGCGCG
CTGCATCAGA CTCATCGCTT TGAGCATATC TTTTCCTGGC TTTTATTAAC GCCAGAGCAA
TTACAGAACA CGCCGGGGAT CGCGAAAAGT AAAAGTGCGC AGCTATGGCA TCAGTTTAAT
CTGGCTCGTA AGCAGCCTTT TACTCGCTGG GTGATGGCAA TGGGAATACC GCTAACCCGG
GCGGCGCTTA ATGCCAGTGA TGAACGGTCC TGGTCGCAAC TTTTATTTAG CACGGAGCAG
TTCTGGCAGC AGCTGCCGGG CACTGGATCG GGGCGCGCCA GACAGGTTAT TGAATGGAAG
GAAAATGCGC AAATCAAGAA GCTGGGCAGT TGGCTGGCTG CCCAGCAGAT CACAGGTTTT
GAACCTTAG
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| Protein sequence | MMMKVWMAIL ISILCWQSSV WAVCPAWSPA RAQEEISRLQ QQIKQWDDVY WKEGKSEVED
GVYDQLSARL TQWQRCFGSE PRDVMMPPLN GAVMHPVAHT GVRKMVDKNA LSLWMRERSD
LWVQPKVDGV AVTLVYRDGK LNKAISRGNG LKGEDWTQKV SLISAVPQTV SGPLANSTLQ
GEIFLQREGH IQQQMGGINA RAKVAGLMMR QDDSDTLNSL GVFVWAWPDG PQLMSDRLKE
LATAGFTLTQ TYTRAVKNAD EVARVRNEWW KAELPFVTDG VVVRAAKEPE SRHWLPGQAE
WLVAWKYQPV AQVAEVKAIQ FAVGKSGKIS VVASLAPVML DDKKVQRVNI GSVRRWQEWD
IAPGDQILVS LAGQGIPRID DVVWRGAERT KPTPPENRFN SLTCYFASDV CQEQFISRLV
WLGAKQVLGL DGIGEAGWRA LHQTHRFEHI FSWLLLTPEQ LQNTPGIAKS KSAQLWHQFN
LARKQPFTRW VMAMGIPLTR AALNASDERS WSQLLFSTEQ FWQQLPGTGS GRARQVIEWK
ENAQIKKLGS WLAAQQITGF EP
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