| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3675 |
|---|
| Symbol | nikA |
|---|
| ID | 5592774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 3659937 |
|---|
| End bp | 3661511 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640922791 |
|---|
| Product | nickel ABC transporter, periplasmic nickel-binding protein NikA |
|---|
| Protein accession | YP_001460271 |
|---|
| Protein GI | 157162953 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02294] nickel ABC transporter, periplasmic nickel-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 65 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTCCA CACTCCGCCG CACTCTATTT GCGCTGCTGG CTTGTGCGTC TTTTATCGTC
CATGCCGCTG CACCAGATGA AATCACCACC ACCTGGCCGG TGAATGTCGG GCCACTAAAC
CCGCACCTTT ACACGCCTAA CCAGATGTTC GCCCAGAGCA TGGTTTATGA ACCATTGGTG
AAATATCAGG CAGACGGTTC GGTGATCCCG TGGCTGGCAA AAAGCTGGAC TCATTCAGAA
GATGGTAAAA CCTGGACCTT CACCCTGCGT GATGACGTGA AATTCTCCAA CGGTGAACCG
TTCGATGCCG AGGCGGCGGC AGAAAACTTC CGCGCAGTGC TCGATAACCG TCAACGTCAC
GCCTGGCTGG AGCTGGCAAA CCAGATTGTT GATGTTAAAG CACTCAGTAA AACAGAGCTG
CAAATTACCC TGAAAAGCGC CTACTATCCT TTCCTGCAAG AACTGGCCCT GCCCCGTCCT
TTCCGTTTTA TCGCTCCCTC GCAGTTTAAA AACCATGAAA CCATGAACGG AATTAAAGCG
CCGATTGGCA CCGGACCGTG GATTTTGCAG GAATCGAAAC TGAATCAGTA CGATGTCTTC
GTCCGTAACG AAAACTACTG GGGCGAAAAG CCAGCGATTA AAAAGATCAC CTTTAACGTC
ATCCCGGACC CGACTACCCG CGCGGTGGCG TTTGAAACTG GCGATATCGA CCTGCTGTAC
GGAAACGAAG GGTTATTACC GCTCGATACC TTCGCCCGCT TTAGCCAGAA TCCGGCTTAC
CACACCCAAC TGTCACAGCC GATCGAAACC GTGATGCTGG CGCTCAATAC CGCCAAAGCC
CCCACCAACG AGCTGGCAGT ACGTGAAGCT CTTAATTACG CGGTAAACAA AAAATCGCTG
ATTGATAACG CGTTGTATGG CACCCAGCAG GTCGCCGACA CCCTGTTTGC CCCTTCTGTG
CCCTACGCCA ACCTCGGCCT GAAACCGCGC CAGTACGATC CGCAAAAAGC GAAAGCGTTG
CTGGAAAAAG CCGGTTGGAC GCTGCCTGCG GGCAAAGACA TCCGCGAGAA AAATGGTCAG
CCGCTGCGCA TTGAACTTTC GTTCATCGGC ACCGATGCGT TAAGCAAATC GATGGCGGAA
ATCATTCAGG CTGATATGCG CCAGATTGGC GCAGATGTCT CGCTGATTGG CGAAGAAGAG
AGCAGTATCT ATGCTCGTCA GCGCGACGGT CGTTTTGGCA TGATTTTCCA CCGCACCTGG
GGCGCGCCAT ATGATCCACA CGCCTTCCTC AGTTCAATGC GCGTACCGTC ACACGCTGAC
TTCCAGGCAC AGCAAGGATT AGCCGACAAA CCGCTGATTG ATAAAGAGAT CGGCGAAGTG
CTGGCGACCC ATGACGAAAC GCAACGTCAG GCGCTGTATC GCGACATTCT GACCCGTCTG
CATGACGAGG CGGTTTATCT GCCTATCAGT TACATCTCAA TGATGGTGGT ATCAAAACCG
GAGCTGGGTA ACATCCCCTA CGCGCCGATC GCCACCGAAA TTCCGTTCGA ACAGATTAAA
CCGGTGAAAC CTTAA
|
|---|
| Protein sequence | MLSTLRRTLF ALLACASFIV HAAAPDEITT TWPVNVGPLN PHLYTPNQMF AQSMVYEPLV
KYQADGSVIP WLAKSWTHSE DGKTWTFTLR DDVKFSNGEP FDAEAAAENF RAVLDNRQRH
AWLELANQIV DVKALSKTEL QITLKSAYYP FLQELALPRP FRFIAPSQFK NHETMNGIKA
PIGTGPWILQ ESKLNQYDVF VRNENYWGEK PAIKKITFNV IPDPTTRAVA FETGDIDLLY
GNEGLLPLDT FARFSQNPAY HTQLSQPIET VMLALNTAKA PTNELAVREA LNYAVNKKSL
IDNALYGTQQ VADTLFAPSV PYANLGLKPR QYDPQKAKAL LEKAGWTLPA GKDIREKNGQ
PLRIELSFIG TDALSKSMAE IIQADMRQIG ADVSLIGEEE SSIYARQRDG RFGMIFHRTW
GAPYDPHAFL SSMRVPSHAD FQAQQGLADK PLIDKEIGEV LATHDETQRQ ALYRDILTRL
HDEAVYLPIS YISMMVVSKP ELGNIPYAPI ATEIPFEQIK PVKP
|
|---|
| |