Gene EcHS_A3521 details

Gene Information

• Locus tag: EcHS_A3521
• Symbol: gspF1
• ID: 5593610
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 3504160
• End bp: 3505356
• Gene Length: 1197 bp
• Protein Length: 398 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640922638
• Product: general secretion pathway protein F
• Protein accession: YP_001460119
• Protein GI: 157162801
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1459] Type II secretory pathway, component PulF
• TIGRFAM ID: [TIGR02120] general secretion pathway protein F

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 0.373913
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTATC GCTATCGCGC CATGACCCAG GATGGTCAAA AATTGCAAGG GATCATTGAT 
GCTAACGATG AACGTCAGGC ACGACTGCGG CTGCGTGAAG AAGGGCTTTT CCTGCTGGAT 
ATTCGCCCCC AAAAAAGTTC GGGAGTAAAA ACACGTCGCC CGAGGATCAG CCATAGTGAA 
CTGACGCTTT TCACCCGGCA GTTGGCAACC TTAAGCGCAG CGGCATTACC CCTGGAAGAG 
AGCCTTGCCG TAATCGGTCA ACAAAGCAGT AATAAACGAC TGGGTGACGT GTTAAATCAG 
GTACGCAGCG CCATCCTTGA AGGGCATCCC CTTTCCGATG CATTACAGCA TTTTCCCACG 
CTTTTCGATT CGCTCTATCG TACCCTGGTA AAAGCGGGCG AAAAGAGCGG GCTGCTGGCC 
CCGGTGTTGG AAAAGCTGGC TGATTACAAT GAAAACCGGC AGAAAATCCG CAGCAAGCTC 
ATTCAGTCAC TGATCTACCC CTGTATGCTC ACTACGGTGG CGATTGGGGT CGTGATTATT 
CTCCTCACTG CTGTCGTGCC CAAAATTACC GAACAGTTCG TGCATATGAA GCAGCAACTG 
CCGCTGAGTA CACGCATTCT TTTAGGTCTG AGCGACACGT TGCAACGTAC CGGCCCGACA 
TTATTAGCGA CAGTGTTTAT TGTCGCTGTA GGTTTCTGGC TCTGGTTAAA ACGCGGCAAT 
AACCGCCACC GTTTTCATGC CATGTTGCTG CGCGTTGCGC TCATCGGCCC GCTGATTTGC 
GCCATTAACA GCGCACGCTA TCTCCGCACT TTAAGTATTT TGCAATCCAG CGGCGTCCCT 
CTGCTGGATG GGATGAATTT GTCCACCGAA AGCCTCAACA ACCTCGAAAT TCGCCAGCGT 
CTGGCAAATG CGGCAGAGAA CGTTCGCCAG GGTAACAGCA TTCATCTTTC GCTGGAACAA 
ACCGCAATTT TCCCGCCGAT GATGCTCTAC ATGGTGGCCT CTGGCGAAAA AAGCGGGCAG 
CTCGGCACAT TAATGGTCAG AGCCGCAGAT AACCAGGAGA CACTCCAACA AAATCGGATC 
GCCTTAACGC TCTCCATCTT CGAGCCAGCA CTCATTATTA CGATGGCACT GATCGTCCTG 
TTTATTGTCG TGTCGGTACT CCAACCTCTT CTTCAACTTA ACTCAATGAT TAATTAA 

 

Protein sequence

MNYRYRAMTQ DGQKLQGIID ANDERQARLR LREEGLFLLD IRPQKSSGVK TRRPRISHSE 
LTLFTRQLAT LSAAALPLEE SLAVIGQQSS NKRLGDVLNQ VRSAILEGHP LSDALQHFPT 
LFDSLYRTLV KAGEKSGLLA PVLEKLADYN ENRQKIRSKL IQSLIYPCML TTVAIGVVII 
LLTAVVPKIT EQFVHMKQQL PLSTRILLGL SDTLQRTGPT LLATVFIVAV GFWLWLKRGN 
NRHRFHAMLL RVALIGPLIC AINSARYLRT LSILQSSGVP LLDGMNLSTE SLNNLEIRQR 
LANAAENVRQ GNSIHLSLEQ TAIFPPMMLY MVASGEKSGQ LGTLMVRAAD NQETLQQNRI 
ALTLSIFEPA LIITMALIVL FIVVSVLQPL LQLNSMIN