Gene EcHS_A3519 details

Gene Information

• Locus tag: EcHS_A3519
• Symbol: gspD1
• ID: 5593286
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 3500708
• End bp: 3502672
• Gene Length: 1965 bp
• Protein Length: 654 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640922636
• Product: general secretion pathway protein D
• Protein accession: YP_001460117
• Protein GI: 157162799
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02517] general secretion pathway protein D

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.0147755
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACTGCG TCATGAAAGG ACTCAATAAA ATCACCTGCT GCTTGCTGGC AGCACTACTC 
ATGCCTTGTG CAGGACACGC TGAGAACGAA CAATACGGCG CGAACTTCAA TAACGCCGAT 
ATCCGCCAGT TCGTGGAAAT AGTGGGTCAG CATCTTGGCA AAACGATCCT GATCGACCCT 
TCGGTACAGG GAACCATTTC CGTACGCAGT AATGATACGT TTAGCCAACA GGAGTACTAC 
CAGTTCTTTT TAAGTATTCT TGATCTTTAC GGTTATTCCG TGATCACGCT GGACAATGGT 
TTTCTGAGAG TGGTTCGCTC AGCTAATGTA AAAACATCGC CAGGGATGAT TGCTGACAGT 
TCTCGTCCAG GCGTAGGTGA TGAGTTGGTC ACCCGAATCG TACCGCTTGA GAACGTTCCT 
GCTCGTGACC TGGCCCCCCT GCTCCGCCAG ATGATGGATG CGGGTAGCGT CGGTAATGTT 
GTGCATTATG AACCCTCCAA CGTTCTTATT CTGACCGGTC GTGCCTCCAC CATTAATAAA 
CTGATTGAAG TCATAAAGCG CGTTGATGTC ATCGGCACAG AGAAGCAGCA AATTATTCAT 
CTGGAATATG CGTCAGCGGA AGATCTCGCC GAGATTCTTA ATCAATTAAT CAGCGAAAGC 
CACGGTAAAA GCCAGATGCC AGCCCTCCTC TCCGCGAGGA TTGTGGCGGA TAAGCGAACC 
AACTCTCTTA TCATCAGTGG ACCGGAAAAA GCACGCCAGC GCATCACTTC ATTACTGAAA 
AGCCTTGATG TCGAAGAGAG CGAGGAAGGA AATACCCGGG TTTATTACCT GAAATATGCT 
AAAGCCACGA ATCTGGTGGA AGTGCTAACC GGTGTTTCCG AAAAGCTGAA AGATGAAAAA 
GGGAATGCGC GTAAGCCCTC CTCTTCTGGC GCGATGGATA ACGTCGCCAT TACCGCCGAT 
GAACAGACTA ACTCTCTGGT CATTACCGCT GACCAGTCCG TCCAGGAAAA ACTCGCCACG 
GTAATTGCGC GTCTGGACAT TCGCCGTGCA CAGGTGCTGG TTGAGGCAAT CATCGTTGAA 
GTTCAGGATG GAAATGGACT AAACCTCGGC GTGCAATGGG CGAATAAAAA CGTTGGCGCA 
CAGCAATTTA CCAATACCGG ATTACCGATT TTTAACGCTG CGCAAGGTGT GGCTGATTAT 
AAAAAGAATG GTGGGATCAC CAGCGCGAAT CCTGCCTGGG ATATGTTTAG CGCCTACAAT 
GGCATGGCCG CAGGCTTCTT CAATGGCGAC TGGGGAGTAC TGCTTACCGC GCTGGCCAGT 
AACAATAAAA ATGACATCCT CGCCACCCCA AGCATCGTAA CGCTGGATAA TAAACTCGCG 
TCCTTCAACG TGGGGCAGGA TGTGCCGGTG CTATCCGGGT CACAGACCAC TTCAGGGGAT 
AACGTCTTTA ATACCGTCGA ACGCAAAACG GTGGGGACAA AACTCAAAGT TACTCCGCAG 
GTCAATGAAG GCGACGCGGT GTTGCTCGAA ATAGAGCAGG AAGTCTCCAG CGTTGACTCT 
TCCTCTAACT CGACGCTCGG CCCGACGTTT AATACCCGTA CTATTCAAAA CGCCGTGCTG 
GTCAAAACCG GTGAAACGGT GGTCCTGGGC GGATTGCTGG ATGATTTTTC TAAAGAGCAA 
GTGTCAAAGG TTCCTCTGCT TGGCGATATT CCTTTAGTGG GGCAACTCTT CCGCTATACC 
TCCACCGAGC GCGCTAAACG CAACCTGATG GTATTTATCC GTCCGACGAT TATCCGTGAC 
GATGATGTTT ATCGCTCACT GTCAAAAGAG AAATACACCC GTTACCTTCA GGAGCAACAA 
CAGCGGATCG ACGGGAAATC AAAAGCGCTG GTTGGCTCGG AAGATTTGCC GGTGCTGGAT 
GAAAACACGT TCAACAGTCA CGCCCCTGCG CCATCGTCAC GGTGA 

 

Protein sequence

MDCVMKGLNK ITCCLLAALL MPCAGHAENE QYGANFNNAD IRQFVEIVGQ HLGKTILIDP 
SVQGTISVRS NDTFSQQEYY QFFLSILDLY GYSVITLDNG FLRVVRSANV KTSPGMIADS 
SRPGVGDELV TRIVPLENVP ARDLAPLLRQ MMDAGSVGNV VHYEPSNVLI LTGRASTINK 
LIEVIKRVDV IGTEKQQIIH LEYASAEDLA EILNQLISES HGKSQMPALL SARIVADKRT 
NSLIISGPEK ARQRITSLLK SLDVEESEEG NTRVYYLKYA KATNLVEVLT GVSEKLKDEK 
GNARKPSSSG AMDNVAITAD EQTNSLVITA DQSVQEKLAT VIARLDIRRA QVLVEAIIVE 
VQDGNGLNLG VQWANKNVGA QQFTNTGLPI FNAAQGVADY KKNGGITSAN PAWDMFSAYN 
GMAAGFFNGD WGVLLTALAS NNKNDILATP SIVTLDNKLA SFNVGQDVPV LSGSQTTSGD 
NVFNTVERKT VGTKLKVTPQ VNEGDAVLLE IEQEVSSVDS SSNSTLGPTF NTRTIQNAVL 
VKTGETVVLG GLLDDFSKEQ VSKVPLLGDI PLVGQLFRYT STERAKRNLM VFIRPTIIRD 
DDVYRSLSKE KYTRYLQEQQ QRIDGKSKAL VGSEDLPVLD ENTFNSHAPA PSSR