| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3490 |
|---|
| Symbol | rpsD |
|---|
| ID | 5592188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 3485398 |
|---|
| End bp | 3486018 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640922607 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_001460088 |
|---|
| Protein GI | 157162770 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.000164824 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAT ATTTGGGTCC TAAGCTCAAG CTGAGCCGTC GTGAGGGCAC CGACTTATTC
CTTAAGTCTG GCGTTCGCGC GATCGATACC AAGTGTAAAA TTGAACAAGC TCCTGGCCAG
CACGGTGCGC GTAAACCGCG TCTGTCTGAC TATGGTGTGC AGTTGCGTGA AAAGCAAAAA
GTTCGCCGTA TCTATGGTGT GCTGGAGCGT CAGTTCCGTA ACTACTACAA AGAAGCAGCA
CGTCTGAAAG GCAACACCGG TGAAAACCTG TTGGCTCTGC TGGAAGGTCG TCTGGACAAC
GTTGTATACC GTATGGGCTT CGGTGCCACT CGTGCAGAAG CACGTCAGCT GGTTAGCCAT
AAAGCAATTA TGGTAAACGG TCGTGTTGTT AACATCGCTT CTTATCAGGT TAGTCCGAAT
GACGTTGTAA GCATTCGTGA GAAAGCGAAG AAGCAGTCTC GCGTGAAAGC CGCTCTGGAG
CTGGCTGAGC AGCGTGAAAA GCCAACCTGG CTGGAAGTTG ATGCTGGCAA GATGGAAGGT
ACGTTTAAGC GTAAGCCGGA GCGTTCTGAT CTGTCTGCGG ACATTAACGA ACACCTGATC
GTCGAGCTTT ACTCCAAGTA A
|
|---|
| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDT KCKIEQAPGQ HGARKPRLSD YGVQLREKQK
VRRIYGVLER QFRNYYKEAA RLKGNTGENL LALLEGRLDN VVYRMGFGAT RAEARQLVSH
KAIMVNGRVV NIASYQVSPN DVVSIREKAK KQSRVKAALE LAEQREKPTW LEVDAGKMEG
TFKRKPERSD LSADINEHLI VELYSK
|
|---|
| |