Gene EcHS_A3480 details

Gene Information

• Locus tag: EcHS_A3480
• Symbol: def
• ID: 5595058
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 3478033
• End bp: 3478542
• Gene Length: 510 bp
• Protein Length: 169 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640922597
• Product: peptide deformylase
• Protein accession: YP_001460078
• Protein GI: 157162760
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.0000466805
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGTTT TGCAAGTGTT ACATATTCCG GACGAGCGGC TTCGCAAAGT TGCTAAACCG 
GTAGAAGAAG TGAATGCAGA AATTCAGCGT ATCGTCGATG ATATGTTCGA GACGATGTAC 
GCAGAAGAAG GTATTGGCCT GGCGGCAACC CAGGTTGATA TCCATCAACG TATCATTGTT 
ATTGATGTTT CGGAAAACCG TGACGAACGG CTAGTGTTAA TCAATCCAGA GCTTTTAGAA 
AAAAGCGGCG AAACAGGCAT TGAAGAAGGT TGCCTGTCGA TCCCTGAACA ACGTGCTTTA 
GTGCCGCGCG CAGAGAAAGT TAAAATTCGC GCCCTTGACC GCGACGGTAA ACCATTTGAA 
CTGGAAGCAG ACGGTCTGTT AGCCATCTGT ATTCAGCATG AGATGGATCA CCTGGTCGGC 
AAACTGTTTA TGGATTATCT GTCACCGCTG AAACAACAAC GTATTCGTCA GAAAGTTGAA 
AAACTGGATC GTCTGAAAGC CCGGGCTTAA 

 

Protein sequence

MSVLQVLHIP DERLRKVAKP VEEVNAEIQR IVDDMFETMY AEEGIGLAAT QVDIHQRIIV 
IDVSENRDER LVLINPELLE KSGETGIEEG CLSIPEQRAL VPRAEKVKIR ALDRDGKPFE 
LEADGLLAIC IQHEMDHLVG KLFMDYLSPL KQQRIRQKVE KLDRLKARA