Gene EcHS_A3436 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A3436 
SymbolcafA 
ID5593847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp3439914 
End bp3441383 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content52% 
IMG OID640922554 
Productribonuclease G 
Protein accessionYP_001460042 
Protein GI157162724 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.0339083 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGCTG AATTGTTAGT AAACGTAACG CCTTCGGAAA CGCGAGTGGC GTATATTGAT 
GGCGGTATTC TGCAGGAAAT TCATATTGAA CGTGAGGCGC GACGCGGAAT AGTAGGCAAT
ATCTACAAGG GTCGTGTAAG TCGTGTACTT CCGGGTATGC AGGCGGCTTT TGTAGATATT
GGGCTGGATA AAGCCGCGTT TCTTCATGCA TCCGACATCA TGCCGCACAC CGAATGTGTG
GCGGGTGAAG AACAAAAGCA ATTCACGGTG CGCGACATCT CGGAACTGGT TCGTCAGGGG
CAAGATCTGA TGGTGCAGGT GGTGAAAGAT CCGCTTGGCA CTAAAGGTGC GCGCCTGACC
ACCGATATCA CGCTCCCTTC TCGCTATCTG GTGTTTATGC CAGGGGCTTC TCACGTTGGG
GTTTCCCAAC GTATTGAAAG CGAATCAGAA CGTGAACGCC TGAAAAAAGT GGTCGCAGAG
TATTGCGACG AGCAGGGCGG GTTTATCATC CGTACCGCAG CGGAAGGGGT TGGCGAGGCT
GAACTGGCCT CCGATGCCGC TTATCTGAAA CGCGTCTGGA CCAAAGTTAT GGAGCGTAAA
AAACGCCCGC AGACCCGTTA TCAGCTGTAC GGCGAACTGG CGCTGGCGCA GCGTGTTCTG
CGTGATTTCG CCGATGCCGA ACTGGACCGC ATTCGCGTTG ACTCACGCCT GACTTACGAA
GCGTTACTTG AGTTCACCTC GGAGTACATT CCCGAGATGA CAAGCAAGCT GGAGCATTAC
ACAGGACGCC AGCCGATTTT CGATCTCTTT GATGTCGAAA ACGAAATCCA GCGAGCGCTG
GAACGCAAAG TAGAACTGAA ATCCGGTGGT TATCTCATTA TCGACCAGAC CGAAGCGATG
ACCACCGTGG ACATCAATAC CGGAGCGTTT GTCGGTCATC GCAATCTGGA CGACACCATT
TTCAATACCA ATATTGAAGC GACGCAGGCT ATCGCTCGCC AGTTACGGTT GCGTAATCTG
GGCGGGATTA TCATTATTGA TTTCATCGAT ATGAATAATG AAGATCACCG CCGCCGAGTG
CTGCACTCGC TGGAGCAGGC GTTGAGCAAA GACCGGGTGA AAACCAGCGT TAATGGTTTT
TCGGCGCTGG GGCTGGTGGA GATGACGCGT AAACGCACCC GCGAAAGCAT TGAGCACGTA
CTGTGTAACG AATGCCCAAC CTGCCACGGT CGCGGAACGG TGAAAACCGT GGAAACGGTA
TGCTATGAAA TCATGCGCGA GATTGTTCGT GTCCACCATG CTTACGACTC CGACCGTTTC
CTGGTCTATG CTTCTCCGGC AGTAGCTGAA GCCTTGAAAG GCGAAGAGTC ACACTCGCTG
GCGGAAGTGG AAATTTTCGT TGGCAAACAG GTTAAAGTAC AAATTGAACC GCTCTATAAC
CAGGAGCAGT TTGACGTCGT AATGATGTAA
 
Protein sequence
MTAELLVNVT PSETRVAYID GGILQEIHIE REARRGIVGN IYKGRVSRVL PGMQAAFVDI 
GLDKAAFLHA SDIMPHTECV AGEEQKQFTV RDISELVRQG QDLMVQVVKD PLGTKGARLT
TDITLPSRYL VFMPGASHVG VSQRIESESE RERLKKVVAE YCDEQGGFII RTAAEGVGEA
ELASDAAYLK RVWTKVMERK KRPQTRYQLY GELALAQRVL RDFADAELDR IRVDSRLTYE
ALLEFTSEYI PEMTSKLEHY TGRQPIFDLF DVENEIQRAL ERKVELKSGG YLIIDQTEAM
TTVDINTGAF VGHRNLDDTI FNTNIEATQA IARQLRLRNL GGIIIIDFID MNNEDHRRRV
LHSLEQALSK DRVKTSVNGF SALGLVEMTR KRTRESIEHV LCNECPTCHG RGTVKTVETV
CYEIMREIVR VHHAYDSDRF LVYASPAVAE ALKGEESHSL AEVEIFVGKQ VKVQIEPLYN
QEQFDVVMM